Bos indicus (zebu cattle): 109562288
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Entry
109562288 CDS
T04792
Symbol
MSH3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu01524
Platinum drug resistance
biu03430
Mismatch repair
biu05200
Pathways in cancer
biu05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109562288 (MSH3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
109562288 (MSH3)
09162 Cancer: specific types
05210 Colorectal cancer
109562288 (MSH3)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
109562288 (MSH3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biu03400
]
109562288 (MSH3)
DNA repair and recombination proteins [BR:
biu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109562288 (MSH3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_III
MutS_I
MutS_II
MutS_IV
CCDC85
Motif
Other DBs
NCBI-GeneID:
109562288
NCBI-ProteinID:
XP_019820934
UniProt:
A0A6P5C5Q3
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Position
7:81509360..81629695
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AA seq
878 aa
AA seq
DB search
MSRRKPASGGAAPANPASAKQAVLSRFFQSTGSLKSTASPAGAAEKADXDSDSEAPLAST
LPPQLQPHVVTEIDRSKKKALESDGPVKKKARKVQEKEEESDSVMSGNSEPKKHLRTRTV
LKSLEKLKEFCCDSALPQNRVQTEPLQKKFAVLPKCTDFEDIDLLRAKNAVSSEDSKSQT
SQKDKTFSHFGPSQKSYENLQKTSDSKPSNKRTKSIYTPLELQYLEMKQQQKDAILCVEC
GYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTET
AALKAIGDNKSSLFSRKLTALYTKSTLIGEDVNPLVKLDDAVNVDEVMTDTSTSYLLCIC
ENKENVKDKKRGSISIGIVGVQPATGEVVFDSFQDSASRSELETRILCLQPVELLLPSDL
SEQTETLIHRVTAMSVRDDRIRVERMKNVYFEYSHAFQEVTEFYAKDVVDIKGSQSFSDI
INLEKPVICSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEMEFMTINGTTLRNLEILQNQT
DMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIE
NHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVESELLQTFI
LEIPGLLSPVEHYLKILNEQAAKIGDKTELFKXLSDFPLIKKRKDEIQDVTKKIQTHLQE
IRKILKNPSAQYVTVSGQEFMIEVKNSAVSCIPTDWVKIGSTKAVSRFHSPFIVENYRHL
NQLREQLVLDCSAEWLAFLENFNEHYHTLCKAVHHLATIDCILSLAKVAKQRDYCRPTLQ
EERKILIKNGRHPVIDVLLGEQDQFVPNSTDLSVSTTS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccggaaaccggcctccggcggcgccgctcccgccaacccagcatctgcaaag
caggctgttttgagcagattcttccagtctacgggaagcttgaaatccaccgcatcccca
gcgggtgcagccgagaaggcggaccytgactctgactccgaggcgcccctagcgtccacg
ctcccgccgcagttgcagccacacgtggttacagaaattgacagaagtaaaaagaaagca
ctggagagtgatgggcctgttaaaaagaaagccaggaaagtccaagaaaaggaagaagaa
agtgattctgtaatgtctggaaactctgagcccaagaaacatctgaggaccaggactgtt
ttaaagtctctggaaaaactgaaagaattctgctgcgattctgcccttcctcaaaataga
gtccagacagaacctcttcagaagaagtttgcagttctgccaaaatgtactgattttgag
gatatcgatcttctacgtgcaaagaatgctgtttcttctgaagattccaaatcccaaact
agccaaaaggacaagacattcagccattttggaccatcacaaaagagttatgaaaaccta
cagaaaacttccgattctaaaccatctaacaaacggactaaaagcatctacacaccctta
gaattacaatacttagaaatgaagcagcagcagaaagatgcgattttgtgtgtggaatgt
ggatataagtatagattctttggggaagatgcagagattgcagcgcgcgagctcaatatc
tattgccatttagatcacaactttatgacagcaagcatacctactcaccgactgtttgtt
cacgtacgccgccttgtggccaaaggatataaggtgggagttgtgaagcaaactgaaaca
gctgctttaaaggccattggggacaacaaaagctcactcttttcccggaaactgactgct
ctttatacaaaatctacacttattggagaagatgtgaatcctctagtcaagctggatgat
gctgtaaatgtcgatgaggtaatgactgatacttctaccagctatcttctgtgtatctgt
gaaaacaaagaaaacgttaaagacaaaaaaagggggagcatttccattggaattgtggga
gtacagcccgccacaggtgaggttgtgttcgacagtttccaggactccgcttcccgttca
gagctcgaaactcggatcctgtgcctgcagccagtggagctgctgcttccgtcagacttg
tcggagcaaacagagacgctcatccacagggtcacggctatgagtgtgcgggatgacaga
attcgagtagaaaggatgaagaatgtgtattttgaatacagccatgctttccaagaggtt
acagaattttatgcaaaagatgtagtcgacattaaaggttctcaaagtttttctgacatc
attaacttggagaagcctgtgatttgttctttggctgccataataagatacctcaaagag
tttaacttggaaaaggtgctttccaaacccaagaattttaaacagttgtcaggtgaaatg
gaatttatgacaattaatggaacaacattaaggaacttggaaatccttcagaatcagact
gatatgaaaaccaaaggaagtttattttgggttttagaccatactaaaacttcatttggg
agacgcaagttaaagaagtgggtgacccagccgctccttaaattaagggaaataaatgct
cgacttgatgctgtatctgaagttctccattcagaatccagtgtgtttggtcagatagaa
aatcatctacgtaaattgcctgacatagagagaggactctgtagcatttatcacaaaaaa
tgttccacgcaagagttcttcctgattgtcaaaaccctgtatcacttgaagtcagaattt
caagcactaatacctgctgtgaattcccatgttgagtcagagttgctccagacatttatt
ttagaaattcctggactcctcagtccagtggagcattacttaaagatactcaatgaacaa
gctgccaagattggggataaaactgaattattcaaagrcctttctgacttccctttaata
aaaaagaggaaggatgaaattcaagacgttaccaagaagatccaaacacatttacaagaa
atacgaaaaatactaaaaaatccttctgcacaatatgtgactgtatcaggacaggagttt
atgattgaagtaaagaattctgctgtatcttgtataccaactgattgggttaagattgga
agcacaaaagctgtgagccgctttcactctccttttattgtagaaaattacagacatctg
aatcagctccgggagcagctagtccttgactgcagtgctgaatggcttgcttttctagag
aatttcaatgaacattatcacaccttgtgtaaagcagtccatcacctagcaacgattgac
tgcattttgtccctggccaaggtcgctaagcaaagagattactgcagaccaactctacaa
gaagaaaggaaaatcctaataaaaaatggccggcaccctgtgattgatgtgctgctggga
gagcaggaccagtttgttcccaatagtacagatttgtcagtaagtaccacatcatga
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