Bradyrhizobium japonicum E109: RN69_09820
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Entry
RN69_09820 CDS
T03509
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RN69_09820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_09820
Enzymes [BR:
bjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RN69_09820
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RN69_09820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJA60659
UniProt:
A0AA87UIG7
LinkDB
All DBs
Position
complement(2088447..2089367)
Genome browser
AA seq
306 aa
AA seq
DB search
MAFQRGKPAAIGVKAPFPGFIEPALATSIEKVPSGERWIHEIKFDGYRVQVHLANEVAKI
FTRRGHDWTHRFKKVAHDAWRIRANSAVVDGEIVVPAADGTTDFSVLQNELKGKSASIVL
VAFDLLYLNGCDIRKLPLFQRKAELKKILSGADIQFSESFEIDGREMFAHACKLGLEGVV
SKVRGSAYPTGRTNDWVKKTCAQRETLTIAGFALDGTKWDGLYVGRRKGDDLVYAGKVDH
GFDKVSAGDLQKRLRPLIRRTQPYAKRIGHKGIWVEPKLLAEIEYRAKSAEGKVRHPFVR
GLREDL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtttcagcgtggaaaaccggcggccatcggcgtcaaggcgcccttccccggcttc
atcgaacccgccttggccacctcgatcgagaaggtgccgtccggagagcgctggattcac
gaaatcaagttcgacggctaccgtgtccaggtccatctggccaacgaggttgcgaagatc
ttcacccggcgcggccatgattggacgcatcgcttcaagaaggtcgcccatgacgcctgg
cggatcagggcgaactcggccgtggtcgacggcgagatcgtggtaccggccgccgatggg
accaccgacttctcggtcctgcagaacgagctcaagggcaagtcggcgagcatcgtgctt
gtagcgttcgatctgctctatctgaacggctgcgatatccggaagctgccgctgtttcag
cgcaaggccgaacttaagaagatcctaagcggcgccgacatccagttcagcgaaagtttc
gagatagacggccgcgagatgttcgcacacgcctgcaagctcggcctcgagggcgtcgtc
tcaaaggttcggggcagcgcctatccgacgggacgcacgaacgactgggtcaagaagacc
tgtgcgcaacgggagacgctgaccattgccggtttcgcactcgatggtacgaagtgggac
gggctctacgtgggccggcgcaagggcgacgatctggtctacgccggcaaggtcgaccac
ggcttcgacaaggtctcggccggcgatctgcagaagcggctcagacccctcatccgaagg
acccagccctatgccaagcgcatcggccacaagggcatctgggttgaaccaaagcttctg
gccgagatcgagtatcgcgcgaaatccgccgagggaaaggtccggcacccgttcgtccgg
ggcttgcgggaggacctgtga
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