Bradyrhizobium japonicum USDA 6: BJ6T_43770
Help
Entry
BJ6T_43770 CDS
T01848
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bju
Bradyrhizobium japonicum USDA 6
Pathway
bju03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bju00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJ6T_43770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bju03021
]
BJ6T_43770 (rpoB)
03400 DNA repair and recombination proteins [BR:
bju03400
]
BJ6T_43770 (rpoB)
Enzymes [BR:
bju01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJ6T_43770 (rpoB)
Transcription machinery [BR:
bju03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJ6T_43770 (rpoB)
DNA repair and recombination proteins [BR:
bju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJ6T_43770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAL09646
LinkDB
All DBs
Position
4472002..4476120
Genome browser
AA seq
1372 aa
AA seq
DB search
MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPAGGRLDEGLQAVFRS
VFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKS
VKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKRT
KEGWRVPFDANRFRGYSTINDLIDADTGKVVLEAGKKLTVRGARQMQEKGLKALRLSDEE
LVGNYLAEDLVNPKTGEIHAEAGEEITDKSMKALNEQGYKELPLLDIDHVNVGAYIRNTL
SADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRLDL
DAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RKVKDGRVTDEVVYLSAMEEGRYTVAQANVPLDPKGRFTEDLVVCRHAGEVLPVTPDKVD
YMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD
SGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVK
VGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIH
IEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREE
IERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQWWL
FASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGW
ACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGEDETIKTLNDNELIELGHNLSRGVPI
ATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKVGPAPTSEAAE
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagacattcaccggtcgcaaacgcgttcgcaagttcttcggacacatcaag
gaagttgccgagatgccgaacctcatcgaggttcagaaggcgtcctatgaccagttcctg
atggtcgacgaacccgcgggcgggcgtctcgacgagggcctgcaggcggtgttccgctcg
gtgttcccgatctccgacttctcgggcacctcgatgctggaattcgtccgctacgaattc
gagcagccgaaatacgacgtcgacgagtgccgccagcgcggcatgaccttcgcggcaccg
ctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggaaaccggcgcgaagtcg
gtgaaggacatcaaggagcaggacgtctacatgggcgacatcccgctcatgacgatgaac
ggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcgcct
ggcgtgttcttcgatcacgacaagggcaagacccattcgtcgggcaagctgctgttcgcc
gcccgcgtcatcccgtatcgcggctcctggctcgacatcgagttcgacgccaaggacatc
gtctatgcgcgtatcgaccgccgccgcaagattccggtaacgtcgctgatgttcgcgctc
ggcctcgacggcgaggcgatcctgtccacgttctacaagaagattctctacaagcggacc
aaggaaggctggcgcgttccgttcgacgccaaccgtttccgcggctactcgaccatcaac
gacctgatcgacgccgacaccggcaaggtcgtgctcgaggccggcaagaagctcaccgtg
cgcggtgcgcgtcagatgcaggagaagggcctgaaggcgctgcggctgtccgatgaggaa
ctcgtcggcaactatctcgccgaggacctcgtcaacccgaagacgggcgagatccacgcg
gaggccggtgaagagatcaccgacaagtcgatgaaggccctcaacgagcagggctacaag
gagctgccgctgctcgacatcgaccacgtcaatgtcggcgcctacatccgcaacacgctc
tcggccgacaagaacatgacgcgcgaggacgcgctgttcgacatctaccgcgtgatgcgt
ccgggcgagccgccgacgctggattcggcgcaggcgatgttccagtcgctgttcttcgac
gccgagcgctacgacctgtccgcggtcggccgcgtcaagatgaacatgcgcctcgacctc
gatgcgcccgacacccagcgtacgctgcgcaaggaagacatcctctccgtcatcaagacg
ctggtggatttgcgcgacggcaagggcgagatcgacgacatcgaccatctcggcaaccgc
cgtgtgcgctcggtcggcgagctcatggagaaccagtaccgcatcggtctgctgcgcatg
gagcgcgcgatcaaggagcgcatgtcctcggtcgacatcgacacggtcatgccgcaggac
ctgatcaacgcgaagccggcggctgccgccgtgcgcgagttcttcggctcctcgcagctc
tcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcgccgcctctcg
gcgcttggaccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcat
ccgacgcattacggccgtatctgcccgatcgagacgccggaaggtccgaacatcggcctg
atcaactcgctcgcgaccttcgcgcgcgtgaacaagtacggcttcgtcgagacgccgtac
cgcaaggtcaaggacggtcgcgtcaccgacgaggtcgtgtacctctcggcgatggaagag
ggccgctacacggtcgcgcaggccaacgtgccgctcgacccgaagggccgcttcaccgaa
gatctcgtggtctgccgtcacgccggcgaagtcttgccggtgacgccggacaaggtcgac
tacatggacgtgtcgccgaagcagctcgtttcggtcgccgcggcgctgattccgttcctc
gagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggccgtgccg
ctggttcgcgccgaggcgccgttcgtcggcaccggcatggaaggcgtggttgcgcgtgac
tcgggtgccgcgatcgcggcgcgccgttcgggcgtgatcgaccagatcgacgcgacccgc
gtcgtcatccgcgccacggaagatctcgatccgaccaagtcgggcgtcgatatctaccgc
ctgatgaagtaccagcgctccaaccagtcgacctgcatcaaccagcgtccgctggtgaag
gtcggcgacatcgtcaagaagggcgacatcatcgccgacggtccgtcgaccgatctcggc
gagctcgcgctcggccgcaacgtgctggtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctccgagcggatcgtgaaggaagacgtcttcacctcgatacac
atcgaggagttcgaggtgatggcccgcgacaccaagctcggccctgaggaaatcacccgc
gacattccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggtatcgtctac
atcggcgcggaagtgcgcgccggcgacatcctggtcggcaagatcacgccgaagggcgaa
agcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcctccgac
gttcgcgacacctcgctgcgcgttcctccgggcgtgcagggcacgatcgtggaagtgcgc
gtgttcaaccgtcacggcgtcgacaaggacgagcgtgcgctggcgatcgagcgggaagag
atcgagcgactggccaaggaccgcgacgacgagcaggcgatcctggaccgcaacgtctac
aaccgtcttgccgagctcctcgagggacggcagggcattgcgggcccgaagggcttcaag
aaggacaccaagatcacccgtgcggtgctcgaggagtacccgaagtcgcagtggtggctg
ttcgcttcgccgaacgacaagctgatggccgagatcgaggccatgcggaagcagtacgac
gagtcgaagaaggggctggaacagcgcttcctcgacaaggtcgagaagcttcagcgcggt
gacgaattgccacccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaag
attcaacccggcgacaagatggccggccgtcacggcaacaagggcgtggtgtcgaagatc
gtgccgatcgaggacatgccgttcctcgaagacggtacgcatgccgacatcgtgctcaat
ccgctcggcgtgccctcgcgcatgaacgtcggacagatcctcgagacccatctcggctgg
gcctgcgccggcctcggcaagcgtatcggccagacggtcgatgcctacctgtcgaagcag
gacatcaagccgctgaaggaaaccttgaagaaggtctacggcgaggacgagacgatcaag
acgctcaacgacaacgagttgatcgagctcggtcacaatctgagccgcggcgtgccgatc
gcgacgccggtgttcgacggcgccaaggaagccgacatcgaggagatgctgaagcttgcc
ggtctcgacgcttcgggtcagtcgaccgtctatgacggccgtaccggcgatgccttcgat
cgcaaggtgacggtgggctacatctacatgctcaagctgcaccatctcgtggacgacaag
atccacgcgcgttcgatcggtccgtactcgctcgtcacccagcagccgctgggcggcaag
gcgcagttcggtggccagcgcttcggcgaaatggaggtgtgggcgctcgaggcttacggc
gcggcgtacacgctccaggagatgctcacggtgaagtcggacgacgtcgccggccgtacc
aaggtgtacgaggccatcgtccgcggcgacgacacgttcgaggccggtattccggaatcg
ttcaacgtgctggtcaaggaaatgcgctcgctcggcctcaacgtcgacctgcacaactcc
aaggtgggaccggcgccgacgtcggaagcagccgagtaa
DBGET
integrated database retrieval system
