Bifidobacterium catenulatum PV20-2: AH68_01385
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Entry
AH68_01385 CDS
T03496
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bka
Bifidobacterium catenulatum PV20-2
Pathway
bka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AH68_01385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bka03019
]
AH68_01385
03009 Ribosome biogenesis [BR:
bka03009
]
AH68_01385
Enzymes [BR:
bka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AH68_01385
Messenger RNA biogenesis [BR:
bka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AH68_01385
Ribosome biogenesis [BR:
bka03009
]
Prokaryotic type
rRNA processing factors
AH68_01385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AIZ13897
UniProt:
A0A0A7I0R5
LinkDB
All DBs
Position
342141..344969
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AA seq
942 aa
AA seq
DB search
MPNTNEGFDQVEAVASPEHVVNVVKFESAQSDPAPRRRRGGRRVVRGVGAAGVSLELKVE
EHAATPLFEEPKLPVAQPAHDAGDVAVSSDDGDSDGMSRPTRRRRRSARPDDDVREIADE
QSTRTRRRRAVQVEDERDEDRLRRRRRSVEDADEYDEMPRRRRRSAVDDSRDEESFEERA
LDAVDMLPEGHEVRHNPRPMMSLLFQEPVLPSVADSRNRSDDDRDDSRESRNDRNMQDHD
DAQDEGHATRRRRRRNRDVADEERSEDNRSERNERDNRNDDAENDEEGGFRKSHRSRRLN
AQERRAAAEVEQIEEDLILDDITYAPIDDETRGSRGDDDDDEQPTRTRRRRRGRGNREEA
DEQQQGNVEGESRRRREEDDEEEGTVTRRRRRRRGGAKSEEQEEPLVRRSRKQQYIDEIT
DVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARREHVDRLMVVRERERHTQISVIED
NVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDSARLE
GQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSE
RERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERITAKRDEFLHGKR
PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH
EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETV
TRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAEV
TSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVSADYDDPYALKGGDPFVKT
NKHGHGTDVQVPKGSSPDVKAKLAQIAAAAVAANNAELGEEA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaataccaatgagggcttcgatcaggtcgaagccgtggcatcgcctgagcatgtc
gtgaatgttgtgaaattcgaatcggcccagtctgatcctgcaccgcgtcgccgtcgtggc
ggtcgtcgtgtggtacgtggggttggagccgccggcgtgtctttggaattgaaggtcgag
gagcatgccgcgaccccgctgttcgaagagccgaagttgccggttgcgcagcctgcacat
gatgccggtgatgtcgctgtttccagtgatgatggcgattccgatggcatgtctcgcccg
actcgtcgccgtcgtcgttcggcccggcccgacgatgatgttcgtgagattgccgatgag
cagtcgacgcgtactcgtcgccgccgcgcggtgcaggtcgaggatgagcgggatgaggat
cgtctgcgtcgccgtcgtcgttccgttgaagatgcggatgagtatgacgagatgccgcgt
cgtcgccgccgcagtgccgtcgatgattcccgtgatgaggaatcgtttgaagaacgtgcg
cttgatgcggtcgatatgttgccggaaggccatgaggtccgtcataatccgcgtccgatg
atgtcgctgctgttccaggagccggttttgccgtctgttgcggattcccgtaacaggtcc
gatgatgatcgtgacgattctcgtgaatctcgcaatgatcgcaatatgcaggatcatgac
gatgcgcaggatgagggccatgcgacccgtcgtcgtcgccgtcgtaatcgtgacgttgcc
gacgaagagcgttccgaagacaatcgcagtgaacgcaacgaacgtgacaatcgtaatgat
gatgcggaaaacgatgaggaaggcggatttcgcaagtcccatcgttcccgtcgtttgaac
gcgcaggaacgtcgagctgctgccgaagtcgagcagattgaagaggatttgatcctcgac
gatatcacgtacgcgcctatcgacgacgaaacacgtggcagtcgtggtgacgatgatgat
gacgagcagccgacgcgcacccgtcgtcgccgtcgtggccgtggcaatcgtgaggaagct
gacgaacagcagcaggggaacgtcgaaggtgagtctcgtcgccgccgtgaggaggatgat
gaggaagagggcacggtgacccgtcgccgtcgccgtcgccgcggcggcgcgaagtccgag
gagcaggaagagccgctcgtacgccgttcccgcaagcagcagtacatcgacgagattacc
gatgtcgagggttcgactcgacttgaggccaagaagcagcgccgtcgtgacaatcgccgc
gagcgtagccgtcaaagccagctcatggaacaggatttcctggctcgccgcgaacatgtg
gaccgcctgatggtggtgcgcgagcgcgaacgccacacgcagatttccgtgatcgaagac
aacgtgcttgtcgagcattacgtgtccgacattcaggaagtcgccacagtgggcaacatc
tatcttggccgcgtgcagaacgtgctgccgagcatggaggccgcgttcgtagacatcggc
caggcgcgcaacggcgtgctatatgcgggtgaggtgaactgggattccgcgcgtttggaa
ggccagcctcgccgcatcgaactcgcgttcaagtcgggagacccggtgctcgtgcaggtc
accaaggatccgatcgggcacaagggcgcacgactgacctcgcaggtcacccttgcgggc
cgtttcctggtgctcgtgccatccggtggcatgacgggcgtgagccgcaagctcagcgag
cgcgaacgttcccgcctcaagaacatcgtgtcgaaggttgctccgaaagacatgggcgtg
atcattcgtaccgctgcggaaggcgcttccgaagaggcgatcaccaaggatctcgaaagc
ttggtgcgccagtgggaacgcatcaccgccaagcgtgacgaattcctgcacggcaagcgt
ccgaagctgctgcaaggcgagccggatgtggcgatccgcgtggtgcgagacatcttcaac
gacgacttctccaagatgatcgttgaaggtgaccgcgtgtacggccgtatcgaggaatat
ctcgacaccatggctcccgacttgaaggacaagcttgaaaagtgggatccggccgaacat
gaaggcaaagacgtgttcgacaagtggcagatcgactcccagctgcgcaagggcatggaa
cgtcaggtttacctgccgtcgggcggttcgatcgtgatcgaccgcaccgaagccatgacc
accatcgacgtgaacaccggccgtttcatcggccgcggcaagagtcttgaggagacggtg
acccgctgcaacctcgaagcttccgaagagatcgcacgtcagctgcgcctgcgcgatatc
ggcggcatggtgatgatcgacttcgtcgacatggtcatgccggccaaccgtgatctggtg
ctgcgcagactggtggaatgcctggctcgcgaccgtaccaagcatcaggtggccgaagtc
acctcgcttggcctggtgcagatgacgcgaaagcgcatcggacagggcttggtagaggcc
ttctccgaggaatgcccgacctgcaagggccgcggattcattcttcacgacgagccgacc
gtgtccgcggattatgacgatccgtacgccttgaagggcggcgacccgttcgtcaaaacc
aacaagcatggtcacggcacggacgtgcaggtgccgaaaggttcctcgccggacgtgaag
gccaaactcgcgcagattgcggcggctgccgtggccgccaacaatgcggaactgggcgag
gaggcatag
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