Bremia lactucae (lettuce downy mildew): 94352387
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Entry
94352387 CDS
T10371
Symbol
CCR75_008666
Name
(RefSeq) hypothetical protein
KO
K12828
splicing factor 3B subunit 1
Organism
blac Bremia lactucae (lettuce downy mildew)
Pathway
blac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
blac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94352387 (CCR75_008666)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
blac03041
]
94352387 (CCR75_008666)
03036 Chromosome and associated proteins [BR:
blac03036
]
94352387 (CCR75_008666)
Spliceosome [BR:
blac03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
94352387 (CCR75_008666)
Complex B
94352387 (CCR75_008666)
Complex C
U2 SnRNP specific factors
94352387 (CCR75_008666)
Chromosome and associated proteins [BR:
blac03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
94352387 (CCR75_008666)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_IPO5
Htt_N-HEAT_1
TPR_DNAAF5
HEAT_2
HEAT_EF3_N
XMAP215_CLASP_TOG
IFRD
Motif
Other DBs
NCBI-GeneID:
94352387
NCBI-ProteinID:
XP_067821566
UniProt:
A0A976IHU2
LinkDB
All DBs
Position
LG2:complement(4927883..4931584)
Genome browser
AA seq
1233 aa
AA seq
DB search
MTEKDDNVGVSLSSTGQFDRDIYGSGPSNQFEGYSATVTEEGDDTEPEARADDHHSRATK
ANASDGLIDESYDPFADTRDANGSGLVNTRIVDRENAYRKRRFERMLSPERGDAFGGKTP
ARSFKEIMHSQQLEQERAEVVRKIQQQREEQEHKKPEPLDGDATPKRRRKRMRWDQEAPV
AEKTDGESQSEWDTVSEISVAATPTRSSSRWDATPAAATPAGVTPGRKNRWDETPVASTD
VTKWDATPTPLGGVTPAGTGKRSRWDETPMSGPNDMATPGKSLHMTPGSSMAVDIMNGAL
TPELAQRLRWEREIEERNRNLTDQELDALFPATGYKILDPPSSYVPIRTPSRKLLATPTP
MGQTPGFAMQATPAREDYGVPIVETPSADGSAMPFIKPEDYQYFGKLMDEVNEDDLDPEA
AMERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHL
LVKVIDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMIS
TMRPDIDIDDEYVRNTTARAFAVVASALGIPALLPFLKAVCQSRKSWQARHTGIKIVQQV
AILMGCAVLPHLKHLVEIIDHGLEDDQKVRTITALALAALAEAAHPYGIESFDSVLRPLW
RGTRKHHGKGLAAFLKAIGFIIPLMDAQYANYYTVEVMEILIREFQSPDEEMKKIVLKVV
KQCVSTDGVEASYVKKKILPEFFRHFWVRRMALDQRNYRQLVETTVELANNVGASEIISR
VVVDLKDESEPYRRMVMEAIQKIISNLGATDIDTDLEEKLIDGILYAFQEQTSDDTFVML
NGFGIVVNALGIRAKNYLPQICGTIKWRLNNKPAKVRMQAADLINRIAVVMKTCDQEPLM
GHMGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMSKMTPPIKDLLPRLTPILKNRHEKV
QENCIDLVGRIADRGADLVSAREWMRICFELLDMLKAHKKGIRRAAVNTFGYIAKAIGPQ
DVLHTLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVVPALMNEYRVPELNVQNGVLKAF
SFMFEYIGEMGKDYIYAVAPLLQDALMDRDLVHRQTACTTVKHLALGVAGLGCEDALVHL
LNFVWPNIFETSPHVINAVFEAIEGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNS
LYMYGQDGLTPAYPVLEDDGVNSYNRTYLELCI
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaaggacgataacgttggcgtgagcctgtcctcaacgggtcaatttgaccgc
gacatttacggttctggtcccagcaaccaatttgaaggctacagtgccaccgtcacagaa
gagggtgacgacacggagccagaagcgcgtgcggacgaccatcactctcgggcaacgaag
gcaaacgcgagcgatgggctcattgacgaaagttacgatccattcgccgatacacgcgat
gctaatggctcaggactcgttaacacgcgcattgtggaccgcgagaatgcgtaccgcaag
cggcggtttgagcgcatgttatcgcccgagcgtggtgacgcgtttggcggcaaaactccg
gcccgaagcttcaaggaaattatgcacagtcagcaactagagcaagagcgcgctgaagtg
gtgcgtaagattcagcagcagcgggaagaacaggaacacaaaaagcctgagccgctggac
ggggatgccacacccaaacgacgacgtaagcggatgcgctgggaccaagaagcccccgtc
gcggaaaagaccgatggtgagagccaatccgaatgggacaccgtgtcggaaatctctgtg
gcggcgacacccacgcggtcgtcctcgcgctgggatgccacgccagccgcagcgacacca
gcgggtgtcaccccaggacggaagaaccgatgggatgaaacacccgtggccagtactgat
gttacgaaatgggacgcgacgccgacgcctttgggcggtgtgacgcctgctggtactgga
aagcgctcacggtgggatgagacgcccatgtcaggtccaaatgacatggctacgcctggc
aagagtctgcatatgacccctggatcctcgatggccgtcgatattatgaatggcgccttg
actccggagttggcgcaacgtttgcgttgggaacgtgaaattgaagagcggaatcggaat
cttacggatcaagagctggatgcgctgtttccagcaacgggatacaagattctggaccct
ccttcctcgtatgtgccgattcgaacgccatctcgaaagctgcttgcgactccgacgcca
atgggacaaacgccagggtttgccatgcaagccactccagcccgtgaagactatggcgtg
cctattgtcgaaacgccctcggcagatggtagtgccatgccttttattaaaccagaggac
taccagtactttggcaagctcatggacgaagtcaatgaagacgatttggaccccgaggct
gccatggaacgtaaaattatgcgcttgctgctaaaaataaaaaatggcactccaccccaa
cgaaagactgcactgcgccagctgacagataaggcacgtgagtttggggcaggtgcgctg
ttcaatcagatcttgccattgctgatggctccaacgttagaagatcaagagcggcattta
ctggtaaaagtcattgatcgagtgctgtacaagcttgatgaccttgtgcgtccatacgtt
cataaaattctcgttgtgattgagcctctgctgatcgatgaggactattatgctcgcgtg
gaaggacgcgaaattatttcaaatttggccaaagcagctggtctggcgacaatgatttca
accatgcgtccagacattgatattgacgacgagtatgtgcgcaatacgacggcacgtgct
tttgcagttgtggcatcggcgcttggcattccagcattgttgccgtttttaaaagcggtt
tgtcagtcgcgaaagtcatggcaagctcgacacactggcatcaagatagtgcaacaagtt
gcgattctgatggggtgcgccgtgttgccgcatctgaaacatcttgtggagattattgac
cacggtcttgaagatgatcagaaagtgcgaacgattactgccttggctcttgctgctctc
gctgaagcggcgcatccgtacggtattgagtcgtttgactcggtgctacgaccgttgtgg
cgtggtaccagaaagcaccatggaaagggattagcggcttttttaaaggctattggcttc
atcattccacttatggacgctcaatatgcgaattactatacggtcgaagtaatggagatc
ttaattcgagagtttcagtcgccggacgaagaaatgaagaaaattgtcttgaaagtggtc
aagcagtgtgtatcgactgatggtgttgaagcttcttatgtcaagaaaaagattttgccc
gaatttttccggcacttttgggtccgtcgtatggcgcttgatcagcgtaattaccgccag
ctggtggagacaacggtggaacttgccaataatgttggtgcaagtgaaattatctcgcgg
gtcgtggtcgatttaaaagatgagagtgagccttatcgccgcatggtaatggaagctatt
cagaaaatcatctcaaacttgggtgccacggacattgatacggatcttgaggagaagttg
attgacggaattttgtatgcttttcaagaacaaacatcggacgacacctttgtgatgctg
aatggatttggcatcgttgtgaacgctctagggatccgtgcgaagaattatttgccgcaa
atttgtggaactatcaagtggcggttgaacaataagccggctaaggtgcgtatgcaggca
gctgacctgattaatcggattgcagttgtcatgaagacgtgtgaccaagaaccgctaatg
gggcatatgggggtcgttttgtacgaatatctgggtgaagagtatcctgaggtgttagga
agcattctaggagccttaaaggccatcgtcaacgtaattggtatgagtaaaatgacccca
ccgatcaaggatttgcttccacgacttactccaatcctcaaaaatcgtcacgaaaaagtt
caagagaattgtatcgacctcgttggccgcattgccgatcgtggtgccgacttggtttca
gctcgcgaatggatgcgcatctgttttgaattgctggacatgctcaaagcccacaagaaa
ggtattcgtcgggcggctgttaatacgtttggctacattgcaaaagcaattggtcctcag
gacgtgctgcatacgttgctgaacaatcttaaggttcaagagcgacagaatcgagtgtgc
actactgtagcaattgctattgtggccgaaacgtgctcgccatttacggtagtgcctgcc
cttatgaatgaataccgcgtgccagagctgaatgtccagaatggtgtcttgaaggcgttt
tctttcatgtttgagtacattggtgaaatgggtaaagattacatttatgcggtcgctcca
ctgctacaggatgcgctcatggatcgtgatttggtacatcgtcagacggcgtgtacaact
gtgaagcacttggctttgggtgttgctggcttaggttgtgaggacgcgcttgtgcacttg
cttaattttgtatggcccaatattttcgaaacttctccacacgtgatcaatgcggtattt
gaagccattgaaggctgtcgggtagccctggggccgcacgtgatcctccagtacgttttg
caaggcctgtttcaccctgcgcgtcgcgtgcgcgaggtgtattggaagatctacaactcg
ctttacatgtatgggcaggacggcttgacccctgcctatccggtgctcgaggacgacggc
gtaaattcgtataatcgtacgtatctggagctttgtatctag
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