Blastococcus sp. PRF04-17: MVA48_01875
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Entry
MVA48_01875 CDS
T08406
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
blap
Blastococcus sp. PRF04-17
Brite
KEGG Orthology (KO) [BR:
blap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blap03021
]
MVA48_01875
Transcription machinery [BR:
blap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MVA48_01875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
HTH_IclR
DUF7343
HTH_3
MarR
Sigma70_ECF
HTH_20
Motif
Other DBs
NCBI-ProteinID:
UOY02160
LinkDB
All DBs
Position
complement(368283..369263)
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AA seq
326 aa
AA seq
DB search
MSRSPSTGETPVVEVPLPDQRSEDVDPGPETVDQEPTDAEIVPDPRAAATDEDPPAVEPA
EASTETEAAPPLSDNRRRAERTAPLFAELATLDKGDPRRERLREVLVEEHLPLVRHFARR
FSNRGEPFDDLLQVGTLGLIAAIDRFDPTRGVEFLSFAVPTITGEIKRHFRDQGWSVRVP
RRLQELHLSLNAAVGELAQKNGRAPTPSELAEHLGIPRAEVLEGLAVANAYRSSSLDERL
SGEDDSPTLAATLGEEDAALEGVEYRESLQPLLATIPARERRILILRFFGNMTQSQIAAD
IGISQMHVSRLLSQTLAKLREGLLKD
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggtcaccctcgaccggcgagacccccgtcgtggaggtaccactgcccgaccag
cgctccgaggacgtggatcccggacccgagaccgtcgaccaggagccgaccgacgccgag
atcgtcccggacccccgggccgcagcgacggacgaggacccaccggccgtcgagcccgcc
gaggcctcgaccgagacagaggccgcgccgccgctctcggacaaccggcgccgggccgag
cggacggcgccgctgttcgccgagctcgccacgctggacaagggcgacccgcggcgcgag
cggctgcgggaggtcctcgtcgaggagcacctgccgctggtccggcacttcgcgcgccgg
ttcagcaaccgcggcgagccgttcgacgacctgctccaggtgggcacgctgggcctgatc
gcggccatcgaccggttcgacccgacgcgcggggtggagttcctctcgttcgccgtgccg
acgatcaccggtgagatcaagcggcacttccgcgaccagggctggtcggtgcgcgtgccg
cgccggctgcaggagctgcacctgtcgctgaacgcggcggtgggcgagctcgcccagaag
aacggccgggcgcccacaccgtcggagctcgccgagcacctgggcatcccgcgcgccgag
gtgctggaggggctcgcggtcgccaacgcctaccggagcagctccctggacgagcggctc
tccggcgaggacgactcccccacgctggcggcgacgctcggcgaggaggacgccgccctc
gagggcgtggagtaccgggagtcgctgcagccgctgctggcgaccatccccgctcgtgag
cgccgcatcctcatcctgcggttcttcggcaacatgacgcagtcgcagatcgccgcggac
atcggcatctcgcagatgcacgtctcgcggctgctgagccagaccctcgccaagctccgc
gagggcctgctcaaggactga
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