Burkholderia latens: WK25_01000
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Entry
WK25_01000 CDS
T04819
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
blat
Burkholderia latens
Pathway
blat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WK25_01000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blat03021
]
WK25_01000 (rpoB)
03400 DNA repair and recombination proteins [BR:
blat03400
]
WK25_01000 (rpoB)
Enzymes [BR:
blat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WK25_01000 (rpoB)
Transcription machinery [BR:
blat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WK25_01000 (rpoB)
DNA repair and recombination proteins [BR:
blat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WK25_01000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
AOK03168
UniProt:
A0AAP1C2H8
LinkDB
All DBs
Position
1:complement(201118..205224)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPVTQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIASANDEITESVLEKLREAGIKDIQTLYTNDLDQGPYISSTLRVD
ETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYMIAQANAAIDEDGRLIDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIEELRVFLTKIYNESGRQEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAFPDDIAQQLDMNPSKNQVRLYDGRTGEPFERRVTLGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttccgttcttgctggccacccagcttgaatcattcagcacgtttctgcaa
gccgatgtgccggtcacgcaacgcaagcctgaaggtttgcaggccgcattcacatcggta
tttcccattgtttcgcacaacggctttgcgcgcctcgagttcgtgagctatgcgctgtcc
tcgccggcattcaacatcaaggaatgccagcagcggggcctgacgtactgctccgcgctg
cgcgcgaaggtccgcctcgtcatcctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgacgggctcg
ttcgtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggccatcggcctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcacgctgatggacgaa
ggcgcgcaactcgagttcgtgcccgagcgcctgcgtggtgaagtcgcgcgcttcgacatc
acggatcgtgatggcaaggtcatcgtccagaaggacaagcggatcaatgcgaagcacatc
cgcgacctcgaagccgcgaagacgaagttcatctcggtgccggaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacaccggtgaagtgatcgcgagcgcgaac
gacgaaatcaccgaaagcgtgctcgagaagctgcgcgaagcgggcatcaaggacatccag
acgctctacacgaacgatctggaccagggtccgtacatttcgtcgacgctgcgtgtcgac
gaaacgaccgacaagacggccgcgcgcatcgcaatctaccggatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggcgctgttcaaccgtctgttctacagcgaagaagcg
tacgacctgtcgaaggtcggccgcatgaagttcaaccgccgcgtcggtcgtgacgaaatc
gtcggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgacatcgaccacctcggcaaccgtcgcgtgcgt
tgcgtcggcgaactggcggaaaaccagttccgcgcgggtctcgtgcgtgtcgagcgcgcg
gtcaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgatccgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgagcgcgcaggcttcgaagtgcgcgacgtgcacccgacccac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactcg
ctggcgttgtacgcgcacctgaacgagtacggcttcctcgagacgccgtaccgcaaggtc
gtggacggcaaggtgaccgaccagatcgactacctgtcggcgatcgaggaaggccgctac
atgatcgcccaggcgaacgccgcgatcgacgaagacggccgactgatcgacgaactcgtg
tcgtcgcgtgaagccggcgaaacgatgatggtcacgccggaccgtatccagtacatggac
gtcgcgccgtcgcagatcgtatcggttgcagcttcgctgatcccgttcctcgagcacgac
gacgcgaaccgtgcactgatgggttcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggaaaagccggtcgtcggtacgggcatcgagcgcacctgcgcggtcgactcgggcacg
acggttcaggcgttccgtggcggcgtcgtcgactacgtcgatgcaggccgtatcgtgatt
cgcgtgaacgacgacgaagcggtcgcaggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaatcagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgatggcgcatccacggacctgggcgagctt
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggac
tcgatcctgatctcggagaaggtcgtggccgacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgttgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gcggaagtcgaagcgggcgacgtactggtcggcaaggtcacgccgaagggcgagactcag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtgcaggtgttc
acgcgtgaaggcatccagcgcgacaagcgcgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctcgacctgaacgaccagctgcgcatcgttgaaggcgacgcgttccagcgt
cttgcgcgcatgctggtgggcaaggttgcgaacggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcttacctggaagacctcgaccactaccactggttcgacatccgc
cttgcggatgacgaagcagcggcgcagctcgaagcgatcaagaactcgatcgaagagaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctggcggtgaagcgccgcctgcag
cctggcgacaagatggcaggccgtcacggcaacaagggtgtcgtgtcgaagatcgttccg
atcgaagacatgccgtacatggccgacggccgtccggcagacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggttctggaagtccacctcggctgggccgcg
aagggtctcggctggcgtatcggcgagatgctgcagcgtcaggcgaagatcgaggaactg
cgcgtgttcctgacgaagatctacaacgagtcgggccgccaggaagatctggaaagcttc
accgacgacgagatcctcgagctcgcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgggcaagatgctcgacctcgcgttcccg
gacgacatcgcacagcagctcgacatgaacccgtcgaagaaccaggtccgcctgtacgac
ggccgcacgggcgagccgttcgaacgccgcgtgacgctcggctacatgcactacctgaag
ctgcaccacctggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggcggtcagcgtttcggtgaaatggaa
gtgtgggcactcgaagcgtacggcgcgtcctacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggacgaaggtgtacgagaacctcgtcaagggcgatcacgtg
atcgatgcaggcatgccggaatccttcaacgtgctggtgaaggaaatccgctcgctcggt
atcgacatcgatctcgaccgcaattaa
DBGET
integrated database retrieval system
