Lederbergia lenta: NCTC4824_02593
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Entry
NCTC4824_02593 CDS
T06924
Symbol
rny
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
blen
Lederbergia lenta
Pathway
blen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC4824_02593 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blen03019
]
NCTC4824_02593 (rny)
Messenger RNA biogenesis [BR:
blen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC4824_02593 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF3450
KH_2
Exonuc_VII_L
DUF2844
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
SQI60102
UniProt:
A0A2X4WN27
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All DBs
Position
1:complement(2569360..2570919)
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AA seq
519 aa
AA seq
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MDSIHIISILLALIAGVVVGYFIFKKIAEVKVTGAKHAAEHIIEDANREAEALKKEALLE
AKDENHKLRIETERDLRERRNELQKQENRLLQREENLDRKDDTLDKRENALEKKEDSINE
RQQHIEETESKVEELIHKQQTELERISSLTREEAKSIILSSVEKELAHDTALMIKESEMR
AKEDADKKAKNILSLAIQRCAAEHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARIALEKLVQDGRIHPARIEEMVDKARREVDEYIRE
IGEQTTFEVGIHGLHPDLIKILGRLKYRTSYGQNVLKHSVEVAYLSGLLAAELGEDEILA
RRAGLLHDIGKAIDHEVEGSHVEIGIELATKYKEHPVVINSIASHHGDTEPTSIIAVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSFAIQAGREVRIIVKPEQIND
LEAHRLARDIRKRIEDDLDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatagtattcatatcatctccattttgcttgcccttatcgccggtgtagttgttggc
tacttcatttttaaaaaaattgccgaagtgaaagtaacaggtgcaaagcatgccgcagag
catattattgaagatgctaatcgtgaagcggaagcacttaagaaggaagccctgttagaa
gcgaaagatgaaaatcataaacttcgcattgaaactgaacgtgatcttcgtgaaagaaga
aacgaattgcaaaaacaagaaaatcgcttattgcaaagggaggaaaacctcgacaggaaa
gatgacacgctggataagcgggaaaacgctcttgagaagaaagaggactctattaatgaa
agacaacaacatattgaagagacggaaagtaaagtggaggaattaatccataagcaacag
actgaactggagcgcatttcgagcctaactcgtgaggaagcgaaatccattattctttct
agtgtagaaaaggaattggcacatgatacagctttaatgattaaggaaagcgaaatgcgc
gcgaaagaagacgctgataagaaggcgaaaaatattctttcactcgcaattcagcgttgt
gccgcagaacatgttgcagaaacgaccgtttcggttgtaaatcttccaaatgatgaaatg
aaaggccgaatcattgggagggaaggtcggaatattcgaacgcttgaaacattaacgggt
attgatcttatcattgacgatacaccagaagctgttatactttcaggattcgatccgatt
agacgtgaaactgcaagaatcgctctcgaaaagcttgtccaagatggaagaatccatcca
gctcgtattgaggaaatggtggataaagcgagacgtgaagtagatgagtacattcgtgaa
atcggagaacaaacgacatttgaagttggcatacatggtcttcatccagatttaattaaa
attctcggtcgattgaaataccggacaagttacggacaaaatgtgctgaaacattctgtg
gaagttgcgtatctttccggattgcttgccgcagaattgggtgaagatgaaattcttgct
agacgtgctggtttgctacatgatattggaaaagcaattgaccatgaagtagaaggaagt
cacgtagaaattggtattgaactcgcaacgaagtataaggagcatcctgtcgttattaac
agtattgcatcccatcacggtgataccgagccaacatctatcattgcagtactcgttgct
gcagcggatgcattatctgctgctagaccgggagcgcgcagtgaaacacttgagaattac
atccgtcgtcttgaaaaattggaggagatttccgagtcatatgatggagtggagaaatca
ttcgccattcaagcaggaagagaagttcgcataatcgttaagcctgaacaaatcaatgat
ttggaagcacatcgattggcacgtgatatccgtaaaagaatcgaagatgaccttgattac
ccaggtcacataaaagtcactgttattcgagaaacgagagcagttgaatatgcaaaataa
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