Salinivirga cyanobacteriivorans: L21SP5_01104
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Entry
L21SP5_01104 CDS
T04172
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP5_01104 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blq03021
]
L21SP5_01104 (rpoB)
03400 DNA repair and recombination proteins [BR:
blq03400
]
L21SP5_01104 (rpoB)
Enzymes [BR:
blq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP5_01104 (rpoB)
Transcription machinery [BR:
blq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP5_01104 (rpoB)
DNA repair and recombination proteins [BR:
blq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP5_01104 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALO14768
UniProt:
A0A0S2HXG5
LinkDB
All DBs
Position
complement(1345959..1349774)
Genome browser
AA seq
1271 aa
AA seq
DB search
MASTQNINGRISFASIKNQLEYPDFLEIQLKSFYEFFQLNSTLAHRKSEGLRRVFQENFP
ITDTRNNFVLEFLDYQVDPPRYTINECIERGLTYSVPLKAKLKLYCTDPEHEDFDTVVQD
VYLGTVPYMSPKGTFIINGAERIIVSQLHRSPGVFFGQSLHANGTKLYSARIIPFKGSWI
EFATDINNVMYAYIDRKKKLPVTTLLRSIGFESDKDILEIFDLADEIKVTKTGLKKAIGR
KLAARVLKSWIEDFVDEDTGEVVSIERNEVIIDRETILENEHIEEIIDSGAKTILLHKED
TNLSDYAIIYNTLQKDPCNSEKEAVLHIYRQLRNSEPPDEATARDVIDKLFFSDKRYDLG
DVGRYRLNKKLGADIDMDTRILTEEDIILIIKYLIELINSKADVDDIDHLSNRRVRTVGE
QLYNQFGVGLARMARTIRERMNVRDNEVFTPVDLINSKTLSSVINSFFGTNALSQFMDQT
NPLAEMTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSMCVF
AKVNELGFIETPYRKVQSGQVDMTDQGVVYLSAEEEEEQIIAQANAPLDEQGKFVNDRVK
SRLEADYPVTSPDEIHLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLNA
ESPIVGTGIERKTALDSRNVLVAEADGIVDYVDAEELVIRYNRTEDERFVSFHDDIVRYR
LDKFHKTNQNSSLNIRPIVHKGQKLQKGDVLTEGYGTKGGDLALGRNLKVAFMPWKGYNF
EDAIVVSDRVVREDVFTSIHINEHILEVRDTKRGMEELTADIPNVSEEATKDLDENGLIR
IGAHIKPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAGPSDYGVVINKK
LFSRTVKDRKVKSAEKVLIEKLDKEMEGKVGELRNKLIDKLFILVNGKTSQGVKDYFSSD
VVAKGTKFTQKLLNDIDYLQVNPSKWTTDKKKNDLIESLIHNYNVKYMEIDGEFKRKKFN
ITIGDELPNGIVQLAKVYVAQKRKVKVGDKMAGRHGNKGIVAKVVRKEDMPFLEDGSPVD
IVLNPLGVPSRMNLGQIYETVLGWAGMELGVKFSTPIFDGASLDEINEYTDEAKVPRYGK
TQLIDGETGEPFHQLATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQR
FGEMEVWALEAFGASNILQEILTIKSDDVQGRAKAYEYIVKGDSLPDPGVPESFNVLLHE
LRGLGLSISLE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacacaaaatatcaacggacggatttcgtttgcctccattaaaaatcaactt
gagtatcccgattttctcgagatacagttgaaatcattctatgagttcttccaattgaac
tctaccctggctcatagaaaaagtgaaggtttacgtagggtgtttcaggaaaactttcca
attacagataccaggaacaactttgttcttgagtttctcgactatcaggtcgacccccca
aggtacacaataaatgagtgtatcgaacgtgggcttacctacagtgtgccgctaaaggca
aaactgaaactttattgtaccgaccccgaacatgaggatttcgatacggttgtgcaggat
gtatatcttggcacagtcccttatatgagtcctaagggtacttttattatcaacggtgca
gaaagaattatcgtaagccaacttcacaggtcgccgggtgtgttctttggccaaagttta
cacgccaacgggaccaaactttattcggccagaattataccgtttaaaggttcatggatc
gaatttgctacagacatcaataatgtcatgtatgcatatatcgatcgaaaaaagaaattg
ccggtcacaacactattaagaagtattggttttgagagtgataaagatattcttgaaatc
tttgaccttgcagatgaaattaaggtgaccaaaaccggccttaaaaaggccattggacgc
aaactggctgcccgtgttctgaaaagctggatcgaggatttcgtggacgaggatacagga
gaggtggtttctattgaaagaaacgaagttatcatcgatcgtgaaaccatacttgaaaat
gaacatattgaagaaataatagattctggcgctaaaactattctccttcataaagaggat
acaaacttaagcgactatgctattatttacaatacgctgcaaaaagacccctgtaactcc
gaaaaagaggcggtactgcatatttaccgacaattgcggaattcagaaccacctgatgaa
gctactgccagggacgttattgataagcttttcttttctgataagcgttacgatcttggc
gatgtaggacgttacagattaaataaaaagttaggtgcagatatcgatatggatacacgc
atcctgactgaagaggatataattttaattataaaatacctgatcgaacttattaactct
aaagctgatgttgatgatatcgatcaccttagtaatcgtcgcgtacgtacagttggtgaa
caactctataaccaatttggtgtaggtttagctcgtatggcgcgcaccattcgcgaaaga
atgaatgtaagagacaatgaggtatttacacctgtggatttgattaattcaaaaacactc
tcttctgttattaattcatttttcggaacaaacgcactttctcagtttatggatcagacc
aacccactggctgagatgacacacaaacggagaatgtctgcactcggtccgggtggtttg
tcaagagaaagagccggttttgaggtgcgtgacgtgcactatacgcactatggtcgtttg
tgccccattgaaacacctgaaggaccaaacattggtctgatttcttcaatgtgtgtgttt
gctaaggttaatgaactcggatttatagaaacaccctaccgtaaagttcaaagcgggcag
gtcgacatgactgatcagggggtagtttatttaagtgctgaagaagaagaggaacaaatt
attgcccaggccaatgcgccacttgatgaacaaggcaaatttgttaacgatcgcgttaag
tctcgacttgaagcagattatcccgtaacatcgccagatgaaattcatttgatggatgtt
gcaccaaaccaaattgcttcaattgctgcatcactgattccattccttgagcacgatgat
gcgaaccgtgccctaatgggttctaacatgatgcgccaggccgttccgttgctgaatgca
gaatctccgattgtaggaaccggtatagagcgtaaaacagctcttgattcacgtaatgta
ctggtagcagaagcagacggtatcgtggattatgttgatgcagaagagttggtgatcaga
tacaatagaacagaggacgagcggtttgtgagttttcatgatgatattgtacgttaccgt
ctcgataagttccataaaaccaaccaaaactcatctctgaatatacgccccatagttcat
aaagggcaaaaacttcagaaaggcgatgtgcttacggagggttatggtaccaaaggcggt
gatcttgcacttggacgtaacctgaaagtggcatttatgccctggaagggatacaacttc
gaggatgctattgtggtaagtgatcgcgttgtgcgtgaagacgtatttacttctattcat
attaatgaacatattctggaagtacgtgatacaaagcgcggaatggaagagcttactgct
gatatccctaatgttagtgaagaggcaacaaaagaccttgatgagaatggtttgattaga
atcggagctcatataaaacctggtgatattttaattggtaagattacgccaaaaggagaa
tctgatccttcaccagaggaaaaactgctacgtgcaatatttggcgataaggccggtgat
gtaaaagatgcatcattgaaagccggaccatcagattatggcgttgtgataaacaaaaag
ttgttttcacgtacagttaaagatcgcaaggtaaaatcagcagagaaggtccttattgaa
aaacttgataaagagatggaaggtaaagtcggtgaacttagaaataagcttatcgataaa
ctcttcatcctggtcaatggcaaaacatcgcaaggtgtaaaagactatttcagcagcgac
gtagtagccaaaggcactaagtttacgcagaaattgttgaatgacattgattatttacag
gttaacccttcgaagtggactactgataagaaaaagaacgacctcattgaatctcttatt
cacaactacaatgtgaaatatatggagattgatggtgagtttaaacgaaaaaaattcaat
ataacgattggtgatgaactgcccaatggaattgttcaactagccaaggtatatgtagca
caaaaacgtaaggtgaaagttggtgataaaatggccggacgccacggtaataaaggtatt
gttgcaaaagttgttcgtaaagaagacatgcctttccttgaagatggctcaccggtagac
attgtattgaacccacttggtgtaccttcacgtatgaaccttggtcagatttatgaaaca
gttcttggctgggctggtatggagctgggagtgaaattctctacaccaattttcgatggt
gcatcgcttgacgagataaacgaatataccgatgaagcaaaagtaccacgatatggaaaa
actcagctaattgatggcgaaacaggggaaccatttcaccagttagccacagtaggcgta
atttatatgctgaaacttggccacatggtagatgataaaatgcacgctcgttcaatcgga
ccttattcacttattacgcaacagccattgggtggtaaagctcagtttggtggtcagcgt
tttggtgagatggaggtttgggcgctcgaagcatttggagcatccaatatcttgcaggaa
attctgacaattaaatcagatgatgtgcaaggtcgtgccaaggcatatgaatatattgta
aaaggtgattcattgccggatcccggagtaccagaatcattcaatgtattgttgcatgag
ctgagaggtctgggattaagtatcagcctcgagtag
DBGET
integrated database retrieval system
