Salinivirga cyanobacteriivorans: L21SP5_03928
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Entry
L21SP5_03928 CDS
T04172
Symbol
gcdB
Name
(GenBank) Glutaconyl-CoA decarboxylase subunit beta
KO
K20509
carboxybiotin decarboxylase [EC:
7.2.4.1
]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq00362
Benzoate degradation
blq00620
Pyruvate metabolism
blq00650
Butanoate metabolism
blq01100
Metabolic pathways
blq01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
L21SP5_03928 (gcdB)
00650 Butanoate metabolism
L21SP5_03928 (gcdB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
L21SP5_03928 (gcdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
blq02000
]
L21SP5_03928 (gcdB)
Enzymes [BR:
blq01000
]
7. Translocases
7.2 Catalysing the translocation of inorganic cations
7.2.4 Linked to decarboxylation
7.2.4.1 carboxybiotin decarboxylase
L21SP5_03928 (gcdB)
Transporters [BR:
blq02000
]
Other transporters
Primary active transporters [TC:
3
]
L21SP5_03928 (gcdB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OAD_beta
DUF5640
Lipocalin_4
Nop
Motif
Other DBs
NCBI-ProteinID:
ALO17519
UniProt:
A0A0S2I5D0
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All DBs
Position
complement(4777006..4778652)
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AA seq
548 aa
AA seq
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MKNIFLLLLMFLFLGATSGQAQKQDIKAQLLDGKWLNKAGGYLPRPIAEDANEEVETVER
YKFLTFKADGSFEMDSAKTRYPGKWKIVGNKVVMIFTPKKITHFHRNTDPNNRSSNYRTT
DEVVDLGTREGYLKDGKLVMNHTTYTNYSGATAGLINFYEFSGFANVTHGNLIMIVIGLF
FIFLAIKYDYEPLLLIPIGTGILIGNIPMFQAVDFNLQLGVYEPGSVMNYLYQGVVQGWY
PPLIFLGIGAMTDFSSLMSNPRLMLLGAAAQVGIFITFLGALYLGFAPAEAGAIGIIGGA
DGPTAIFLSSKLANGVNIIGYDPSGAPILVKNLIGPIAIAAYSYMALVPVIQPPIIKLFT
SKRERLIKMRPPRAVSRLEKILFPIFGLLITAFIAPTSLPLLGMLFFGNLLKESGVTARL
ANTASNALIDTITILLGLTVGASTQADVFLTKDSILIFGLGAASFAIATMGGLIFAKIMN
WLSPNHNPVNPMIGASGVSAVPDSARVVQNMGVKEDPTNHLLMHAMAPNVSGVIGSAVGA
GILLSFLM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacatatttctcctgctattgatgtttttgttcctgggtgctacatcaggtcag
gcacagaaacaagatatcaaagcacaattacttgacggcaaatggcttaacaaagccggc
ggttatttaccccgcccaatagctgaagatgccaacgaggaagtagaaactgtcgaaaga
tacaagtttttaacctttaaggcggatggatcttttgaaatggattcggctaaaaccagg
tatccgggaaaatggaagattgtaggaaataaagtggtaatgattttcacaccgaaaaaa
attacacacttccatcgcaatacagatcccaataaccgctcatcaaattaccgtactaca
gatgaagttgtagaccttggaacgcgtgaaggctacctcaaagatggtaagttggtaatg
aaccacacaacttataccaattactcaggtgcaacagccggattaataaacttctacgag
ttctcgggttttgccaatgtcacacatggaaatctaatcatgatcgtgattgggctcttc
ttcatctttctggccataaaatatgattacgagccactattgcttattcctattggaacc
ggaattctcataggaaatatacccatgttccaggctgttgactttaacctgcaactgggt
gtttatgagcctggtagtgttatgaattacctgtatcagggtgtagttcagggatggtat
ccacccctcatattccttggtatcggggcaatgacggacttttcatctctgatgtcgaac
ccacgcctaatgttacttggcgctgctgcgcaggttggtatatttatcactttccttggt
gcactatacctgggctttgccccggcagaagcaggtgcaataggtattattggaggtgca
gatggaccgactgcgatttttctctcatctaaacttgccaatggggtcaacattataggg
tatgatccgagtggggcaccaattctggtgaagaacctgatcggaccaattgccattgct
gcctattcctatatggcacttgtaccagtaattcaaccccctataattaagctttttacc
agcaaacgtgaacgcctgattaaaatgcggccgccgcgtgctgtttctcgactggaaaaa
atattatttccaatattcggattgctaattacagcattcattgcacccacttctctccca
cttctggggatgcttttctttggcaacctcctaaaagagagtggggtaacagcccgattg
gccaataccgccagcaatgcactaattgatacaattacaattttgcttggtttaaccgta
ggtgcatctacccaggctgatgtcttccttacaaaagactctatattgattttcggactt
ggagccgcatcatttgctatagctacaatgggtggtcttatttttgccaaaatcatgaat
tggctctctcctaaccataatccggtaaatccaatgattggagcctccggagtatcagct
gtgcctgatagtgcccgggttgtacaaaatatgggtgtgaaagaagatcctacaaaccat
ttgctaatgcatgccatggcgccaaatgtttctggcgttatcggatcggcagttggtgca
ggtatattgctcagtttcttaatgtaa
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