Bradyrhizobium lupini: AB3L03_01435
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Entry
AB3L03_01435 CDS
T11005
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
blup Bradyrhizobium lupini
Pathway
blup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3L03_01435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blup03019
]
AB3L03_01435
03009 Ribosome biogenesis [BR:
blup03009
]
AB3L03_01435
Enzymes [BR:
blup01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB3L03_01435
Messenger RNA biogenesis [BR:
blup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3L03_01435
Ribosome biogenesis [BR:
blup03009
]
Prokaryotic type
rRNA processing factors
AB3L03_01435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
XDI31798
LinkDB
All DBs
Position
262620..264917
Genome browser
AA seq
765 aa
AA seq
DB search
MTSATEPADAVYAAGESAQAPHHDSEATAEDDDEDEDDEEAEEDVVESVGGDDVLEEVPE
RTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGI
SRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWETVRDMT
LKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGDAGYREARDFMKMLMPANVSAVRQY
RDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTA
LKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRI
SHFGLLEMSRQRIRASVLESSTDPCTHCGGTGHVRSVSSVALQLLRGLEEILMKGATHNL
VVRTRTDVALYVLNHKRGHLRDLENGFKVTLSVIADPSVSGPQAYVIDRGEQVHTLEAAK
ALLAAQAAASPPPLVEEAYDDEEFDPETESEVETEETEGLAEEQTAGDAVTEQDGQRRKR
RRRRRGRGGPRDEETREDGAPVIAETAMAAGEGEEDAEAEPDGEEGEEQAARGEQQGSAD
RRRRRGRRGGRRRRGPGEEGLAGSISDELAANAPSEATDAVADFDGFGSEAAPSIAQAEH
TSEPQVNQPEPRAEAKIEAAAQPEPPPAAADEEHADDKAARRRSTVREKVSFLSSSQSEP
TPIAQAAEPVAPPAPAPEPAPAAASETSPAPRRAGWWSRRFGGGE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcggctactgagcctgccgacgccgtgtacgccgcaggtgagagtgcgcaggct
ccgcatcacgactccgaagcgacggccgaggatgacgacgaagacgaggacgacgaggaa
gccgaagaggacgtcgttgaatccgtcggcggcgacgatgtgctggaggaagtgccggag
cgcaccttccgtccccgccgccagtacaagatccaggaagtcatcaagcgtcgccaggtg
atgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgacgacctac
ctctcactcgccggccgttatgccgttttgatgccgaacaccgcgcgcggcggcggcatc
agccgcaagatcacgagcgcgcaggaccgttcgcgcctgaaggaagtggtgcaggatctc
gacgtgcccgagggcatggggatcattctgcgcacggcgggtgccgcccgcaccaagccc
gagatcaagcgcgatttcgagtacctgatccgcatgtgggagacggtgcgcgacatgacg
ctgaagtcgcaggccccgaccctcgtctacgaggaaggctcgctgatcaagcgctcgctg
cgcgacctctacaacaaggagatcgacgagatccaggtggcgggcgatgccggctaccgc
gaagcgcgcgacttcatgaagatgctgatgcccgccaatgtgagcgcggtgagacagtat
cgcgacggccagccgctgttctcgcggatgggcgtcgaaagccagctggatgcgatgttc
tcgccgaccgtacagttgcgctccggcggctacatcgtgatcaaccagaccgaagcgctg
gtctcgatcgacgtcaactccggccgttcgacgcgcgagcatcatatcgaagataccgcg
ctcaagaccaatctcgaggcctccgaggaggttgcgcgtcagcttcggttgcgcgacctc
gccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgcgcggtc
gaacgcaagctgtccgattgcctccggcaggaccgcgcgcggatccaggtcggacgcatc
tcgcatttcggcctgctcgagatgtcacgccagcgcatccgcgctagcgtgctggaatcc
tcgaccgatccctgcacgcattgcggtggcaccggccatgtccgctcggtgtcctcggtt
gcgctccaattgctgcgcggcctcgaagagatcctgatgaagggcgcaacccacaacctc
gtggtccgcacccgcaccgacgtcgcgctctatgtgctgaaccacaagcgcggccatctg
cgcgaccttgagaacggcttcaaggtcacgctgtcggtcatcgccgacccgagcgtcagc
ggaccgcaggcctatgtcatcgaccgcggcgagcaggtgcatacgctggaagccgccaag
gctctgctggcggcgcaggcggccgcaagcccgccgcccctggtcgaagaggcctatgac
gacgaggagttcgatccggagaccgaatccgaggtcgagaccgaggagactgaaggtctc
gccgaggagcagaccgcaggcgacgccgttaccgagcaggacggccagcgccgcaagcgt
cgccgtcgccgccgcggtcgcggtggcccgcgcgacgaggagacgcgcgaggatggcgct
cccgttattgccgagacggccatggcagccggcgaaggcgaagaggatgccgaggccgag
ccggacggcgaggaaggcgaggaacaggcagcccgtggcgagcagcagggcagcgccgac
cgccgtcgccggcgtggtcgccgtggcggacgccgccgtcgcggtcctggagaggaaggt
ctcgccggctccatcagcgacgagctcgctgccaatgcaccgtcggaagcgaccgacgca
gtcgccgatttcgacggttttggcagcgaggctgcgccctcgatcgcgcaggccgagcac
acctctgaaccccaggtcaaccagcctgagccgcgcgccgaggcaaagatcgaggcagcg
gcccagcctgagccgcctcctgctgccgcggacgaagagcacgccgacgacaaggccgca
cgacgccgctcgacggttcgggaaaaggtgagcttcctgtcgagcagccagagtgaaccg
acaccgattgcacaggcggccgagccggttgccccgcccgcccccgctccggagcccgcg
cccgcagcggcaagcgaaacctcgcccgcaccgcgtcgtgccggctggtggtcccgccgc
ttcggcggcggcgaatag
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