Bombyx mori (domestic silkworm): 101738383
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Entry
101738383 CDS
T02817
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101738383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmor03019
]
101738383
Enzymes [BR:
bmor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101738383
Messenger RNA biogenesis [BR:
bmor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101738383
mRNA degradation factors
3'-5' decay
Pan complex
101738383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
WDR55
Beta-prop_EML_2
WD40_like
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
101738383
NCBI-ProteinID:
XP_004924145
UniProt:
A0A8R1WL88
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All DBs
Position
8:5139184..5165934
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AA seq
981 aa
AA seq
DB search
MEYHYSEICMPSDHLTDYTPPFIIPTHEGEYEARNSVLVDGGERFGVSAVVFDKHEELIW
MGNQGGHVTSYYGPNMQKYTSFQVHDTDEVRDIITVEKCIYVLTKTTLRHQLRRGIPKHT
HKSPNMTDMQCLYQVNSTKLLMGGHQDKLIDLDLNKMVETIIPIQEEGCAVLRSGGSSHV
ACGSANGIVALRDMRAPTKAEHTFRAHTACLSDLDMQGDLLLTCGFTQAVGGVVAEPYIV
VWDVRCLRGSNPGQGGWTIHTTSPPLLLHFLPAFSGRAVAASGDGHVSLLHVNAPEERQS
IFKVETHSSQCNVMDVASTSQALAFGDQSGHLNLFSPTQNHEPVYNNFSRSTEFADPVEG
LPYVRFSDTRFQYSSVPLPQLASGGKWFNELPPEFFRKVYRKPKPVDPEVLKSMKMQGPI
GYAPNPKTFKRNQMPYLEESLEEMSISKINGNKVIMQPIPKHYQKLDIRYNKHGPNEELE
SFNKTGQPGLEATLPNSYCNAMLQVLYYTPPVKATLLAHTCAKEFCLSCELGFLFRMLDT
SGGTPCQATNFLRAFRTVPEAAALGLILPDRAPDIRVDLVALIQSWNRFILHQIHYEILE
TRKKEKELALIANSPPKAPRASNPKERHSLMNGQYSEECQYTELEFLGPTEFDCQEDGEL
WPGRDEGVDGVGPLQNHESHELNNRQAHREETEISQLFAIGRHQLNRCLKCNKEEGRESV
VLACALQYPPTGAGGAGEARGGFVELVRASLAARRSTPAWCDHCSRFTPTTQRGRLLRLP
PILAINCGGVTVREKAYWAKGVQKEMSDSKRGGSGKPCRYGLHCARPGCHFKHPDRPNTS
QSSSKGSSQESHCMLPLQLLIRLQSDGDVIINDKIETNSAESSPINRPDTSRHKKKYVTT
HLEEEYSLSAAVVCVEDNPKNLVAYIHTVRDGETQWFMYNDLCIVPVSTDEVIHFGVWWK
TPCVLFYTATGGGQCNGDVSS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcattactccgaaatatgtatgccatccgatcatctaacagattacacaccc
cctttcatcattcccacgcatgaaggggaatatgaagcacgtaacagtgtactcgtggat
ggaggagagagatttggagtttcggcagttgtgttcgataaacatgaagagttgatatgg
atggggaatcagggtggtcatgtaacatcctactacggtccaaatatgcaaaagtacaca
tcatttcaagtacacgatactgatgaagttagagatattatcactgttgaaaaatgtatt
tatgttttgaccaaaacaactctacgccatcagttacgtagaggtatacctaagcacacg
cacaaatcaccaaacatgacagacatgcaatgcctgtatcaagtgaactctacaaaatta
ttgatgggcggacaccaagacaaactaatcgatttggaccttaataaaatggttgaaact
atcattccaatacaagaggaaggctgtgcggtattaagaagcggtggtagcagtcacgtc
gcttgtggtagtgctaacggtatagtggcattgcgggatatgcgtgctcctacaaaagct
gagcatacattcagagcacacacggcttgtctatctgatctggatatgcaaggagatctg
ttgctcacatgtggatttactcaggccgttggaggggtagtcgcagaaccctacatagtg
gtctgggacgtccgatgtctacgcggcagtaaccctggacaaggaggttggaccattcat
accacatcaccgccactgctacttcacttcctgccggcgttctctggtagggcagtagct
gcttcgggcgacggacacgtcagtttgttacacgtgaacgcacctgaagaaaggcagtca
atttttaaggtagagacgcacagttcacagtgcaatgtgatggacgttgcgtcgacgagt
caagccctcgctttcggcgaccaatcaggacatttaaatcttttctcaccgacgcagaat
cacgaacctgtatacaataatttttcaaggtcaacagagttcgcggatccagtggaaggt
ctaccttacgttcggttcagcgacaccaggttccagtactcgtcggtgccactacctcag
ttggcgagcggcgggaaatggttcaatgaattgccaccggaattctttaggaaagtgtat
agaaaaccaaagccagtcgatcctgaagttttgaaatcgatgaaaatgcaaggtccaata
ggatacgcgcctaatccgaaaacttttaaaaggaatcagatgccgtaccttgaagaatcg
ttagaagaaatgagtatatcaaaaataaatggaaataaagtaataatgcagccgataccg
aaacattatcagaagctcgacatacgatataataagcacggtccgaatgaagaattagag
agtttcaataaaacaggtcagcccggactggaagcgacattaccgaattcatactgcaat
gccatgttacaggttttgtactacacgccgccggtcaaagccacgttgctagcgcacacg
tgcgccaaagagttctgtttgagctgcgaattaggttttctatttcgcatgctggacacg
tctggcggcaccccttgtcaggccacaaacttcctacgcgcgtttcgtacggtccccgaa
gcggctgccctaggactgatactgccggatcgagcgcccgacataagagtcgatttggta
gccttaatacagagctggaaccgcttcatcctgcaccagattcattacgagatcctcgag
acccgtaagaaggagaaggagttagcgctgatagcgaacagtccgcccaaagcaccacgc
gcgtccaacccgaaggaacgtcactcgctaatgaacggacagtactccgaggagtgtcag
tataccgaactggagttcttgggacccaccgaatttgattgtcaagaggatggcgaactc
tggccgggcagggatgaaggcgtcgacggcgtggggccgttgcaaaaccacgaaagtcac
gagctgaacaaccgacaggcgcaccgggaggagaccgagatctcgcagctgttcgccatc
ggtcggcatcagctcaaccgctgcttgaagtgcaacaaggaggagggcagggagtcggtg
gtgctggcgtgcgccctgcagtacccgccgacgggcgcgggcggcgccggggaggcgagg
ggcggattcgtcgaactcgtgcgcgcgtcgctggcggcgcggcggagcacgccggcgtgg
tgcgaccactgctcgcggttcacaccgaccacgcagcgagggcgactgctgcgactacct
cctatattggcgattaattgtggaggagttacggtcagagagaaagcgtattgggctaaa
ggagtacaaaaggaaatgtccgattcgaaaagagggggcagcgggaaaccgtgtcgctac
ggcttacattgcgcacgaccgggttgtcatttcaaacatcccgatcggccgaatacatca
caaagttcttccaagggctcgagccaggagtcgcactgcatgctgccgcttcagctgctc
atccggcttcagtcagacggtgacgtcatcatcaacgacaagatcgaaactaattcagcg
gagagttcgccgatcaaccgaccggacacgagcaggcacaaaaagaagtacgtgaccacg
cacctcgaggaggagtactcgctctcggccgccgtcgtctgcgtcgaggacaaccctaag
aacttggtcgcctacatacacacggtccgggacggcgaaactcaatggttcatgtacaac
gatctatgtatcgttccggtgagtacggacgaggtgatacatttcggcgtgtggtggaaa
acgccttgcgtgctattctacacggcgaccggcggcggacagtgcaacggtgacgtcagc
tcatag
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