Burkholderia multivorans ATCC 17616 (JGI): Bmul_5476
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Entry
Bmul_5476 CDS
T00624
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmu
Burkholderia multivorans ATCC 17616 (JGI)
Pathway
bmu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bmul_5476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmu03400
]
Bmul_5476
Enzymes [BR:
bmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bmul_5476
DNA repair and recombination proteins [BR:
bmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bmul_5476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABX19146
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All DBs
Position
3:169384..172167
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AA seq
927 aa
AA seq
DB search
MAGKLDPYRRKRHFDATPEPEGTRRRRAPADAQPAERGRHPLRYVIQEHHARRLHYDFRL
ELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVIVWDEGTW
TPEGGLAKAREGYRAGKLKFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDDDARSAE
AYDVVAQQPGSVHDGATRGHATNGHARARRRGEKAAGKEPDAEADADTDADAPRARATKA
KRPPALSRVEGAVRAPLPERIAPQLATLVDAPPAHGDWRYELKFDGYRMLARIAGKGARR
RVTLMTREGRDWTPKLRALRDALAALEVDDAWLDGEAVVLGENGLPDFQLLQNALGSGQS
DAVTLFVFDLPYLNGYDLRDAPLTARRAQLEPLFDAADPARLRFSPDLGSDAAGLIANAC
DTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGYTEPTGSRHGFGALLLGVHEP
APNGKRTRGASPLRYVGRVGTGFDTRMLDKLAPLLREHERASSPFDPPPQGWSRTRVHWV
EPTLVAECEFAEWTGDGIVRQAAFVALREDKPASQIVREVARHPTTENTMDERTSSSARR
GRAAADTHDGGQDRAQHRAQERAPAARGKSAPDQVGQVRITHPERVLDRESGTRKIDLAH
YWERVAPWALPDLAGRPVSLVRAPQDIGGELFFQKHAERREIPFVTQHPGLDPGHGPLLS
IDSVDALIGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIEAAQLVRGLL
DELGLVSFCKTSGGKGLHVVVPITRHSGWDEMKDFSRAVAQHIAGALPDRFTATMGPRHR
RGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIDWDEVPATTGGAQWTIDTVHERLDA
LERDPWEAYADTRQRITAAMRTRLAAR
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaagcgtcatttcgacgcgacgcccgaaccc
gaaggcacgcgccgccgccgcgcgccggccgacgcgcagccggccgagcgcggccggcat
ccgctgcgctacgtgatccaggagcatcatgcgcggcgcctgcattacgatttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccgagtttcgatccgtcg
gtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatacgcgtcgttcgaaggc
gagattccggcaggccattacggcgcgggctcggtgatcgtctgggacgagggcacgtgg
acgcccgagggcgggctcgcgaaggcgcgcgaaggctatcgcgccggcaagctgaaattc
cggctcgacggcgagaagctgcacggcggctgggcgctcgtgcgtagcggccgccaggaa
gggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgcagcgccgag
gcatacgacgtcgtcgcgcagcagcccggcagcgtgcacgacggcgccacgcgcgggcat
gcgacgaacgggcatgcgcgggcgcgccgacgcggcgagaaggcggccggcaaggagccc
gacgccgaggcggacgccgacaccgacgccgacgcgccacgcgcccgcgcgacgaaagcg
aaacggccgcctgcactgtcgcgcgtcgaaggcgcggtgcgtgcgccgctgccggagcgc
atcgcgccgcaactcgcgacgctcgtcgatgcgccgcccgcgcacggcgactggcgctac
gaactgaagttcgacggctaccggatgctcgcgcgtatcgcgggcaagggcgcgcggcgg
cgcgtgacgctgatgacgcgcgagggccgcgactggacgccgaagctgcgcgcgctgcgc
gatgcgctcgcggcactcgaggtcgacgatgcatggctcgacggcgaagcggtcgtgctc
ggcgagaacgggctgcccgatttccagctgctgcagaacgcgctcggttccgggcagtcg
gatgcggtcacgctgttcgtgttcgatctgccctatctgaacggctatgacctgcgcgat
gcgccgctgacggcacgccgcgcgcaactcgaaccgctgttcgacgccgccgatccggcg
cgcctgcgtttttcgccggatctcggcagcgatgcggccggactgatcgccaacgcgtgc
gacacgggcctcgaagggctgatcggcaagcgcgcggatgcacgctaccgcgcgggacgc
tcgccggcctggatcaagctcaaatgccggcgcaggcaggagttcgtgatcggcggctat
acggagccgaccggtagccgccacggcttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgaacggcaagcgcacgcgcggcgcgtcgccgctgcgctacgtcggccgggtcggc
accggcttcgacacgcggatgctcgacaagctcgcgccgctgctgcgcgagcacgaacgc
gcgtcgtcgccgttcgatccgccgccgcaagggtggtcgcgcacgcgcgtccactgggtc
gagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggcatcgtgcgg
caggccgcgttcgtggcgctgcgcgaggacaagccggcgtcgcagatcgtcagggaagtc
gcacgccaccccaccacggagaacacgatggacgagcgcacgagctcatccgcgcggcgc
ggccgcgccgcggccgacacgcatgacggcgggcaagatcgcgcgcaacaccgcgcgcag
gaacgcgcgcccgccgcacgcggcaagtcggcgcccgatcaggtcggccaggtccgcatc
acgcatccggagcgcgtgctcgatcgcgagagcggcacgcgcaagatcgatctcgcgcac
tactgggaacgcgtcgcgccgtgggcgttgcccgatctcgcgggccgcccggtgtcgctc
gtgcgtgcgccgcaggacatcggcggcgagctgtttttccagaagcacgcggagcgccgc
gagattccgttcgtcacgcagcatccgggactcgaccccggacacggtccgctactgtcg
atcgacagcgtcgatgcgctgatcggcgccgcgcagatgggcacgatcgagctgcatacg
tggaacgcgcacgcgtcgaacatcgagcggccggaccggatcgtgttcgacctcgatccc
gatccggcgctgccgtggcgcacgatgatcgaggccgcgcagctcgtgcgcgggctgctc
gacgagctgggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtggtc
gtgccgatcacgcggcattcgggctgggacgagatgaaggacttctcgcgcgcagtcgcg
cagcacatcgcgggcgcgctgcccgaccgcttcacggcgacgatggggccgcgtcaccgg
cgcggcaagattttcatcgactatctgcgcaacggccgcggcgcgagcacgatcgccgcg
tattcggtgcgtgcgcggcccggcatgggcgtgtcggtgccgatcgactgggacgaagtg
ccggccacgacgggcggcgcgcagtggacgatcgacaccgtgcacgaacggctcgacgcg
ctcgagcgcgatccgtgggaagcgtacgcggacacgcgccagcgcatcacggccgcgatg
cgcacgcgcctcgccgcgcgctga
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