Halobacteriovorax marinus: BMS_3310
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Entry
BMS_3310 CDS
T01659
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BMS_3310 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmx03021
]
BMS_3310 (rpoB)
03400 DNA repair and recombination proteins [BR:
bmx03400
]
BMS_3310 (rpoB)
Enzymes [BR:
bmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BMS_3310 (rpoB)
Transcription machinery [BR:
bmx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BMS_3310 (rpoB)
DNA repair and recombination proteins [BR:
bmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BMS_3310 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RelB
Motif
Other DBs
NCBI-ProteinID:
CBW28056
UniProt:
E1X0N0
LinkDB
All DBs
Position
complement(3298945..3302991)
Genome browser
AA seq
1348 aa
AA seq
DB search
MNLQLKSFEEFLQKDVPPAQRKMVGLQQVFHSVFPIHDFNKTVSLEFVSYTLEEPKYSVK
ECRQRGLSYEAPLKVVVRLVFYEVNVDKDGNEQRTVSSIKEQEVYLGNIPLMAETGSFVY
NGTERVIVSQLHRSPGIIFEHDSGKKHSSGKLLYSARIIPHRGSWLDFEFDHKNVLFARI
DRKRKLHATVVLKAMGYSTTDLLEMFYEMETLNINKDATFTRELDFSLMIGTRALNDILD
PSSGKALVKKGKKFTKASVKKLNEAGITEISAELEEVIGKVAAEDIFDENTGEVLCLANE
ALSEAKIQELIAAGITKVKVIYIDMINFGDQVRNTLLLDKTDTRDTALIKIFERLRPGEP
PTVEAAEQLFDNLFFNEEKYDLSKVGRMKINYKFGLNVPVENTVLTKEDIIMTAKYLVEL
NNGKGKVDDIDHLGNRRVRAVGELLENQFRVGLVRMERAVKERMAIQEIETMMPYDLVNQ
KPVSASVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHY
GRMCPVETPEGPNIGLITSLATYARVSEYGFIETPYQTVNEDLSLGAAKYFTAFEEEGKV
IAQIDNNHIVDGKVDGEHVPSRAAGEFTLVPNDQVELMDVSPQQMISIATSLIPFLEHDD
ANRALMGSNMMRQAVPVVRTDAPIVGTGIESTVARDSGAILFAKHSGRVIFVDSNRIVIQ
RDKFDEGQSGVDIYKLVKYQRTNQNTCNNQKALVKEGDVVSKGMVIADGPGTHLGDLALG
QNVLVAFMPWGGYNYEDSILINERLLARDVFTSVHIESYEVEARDTKLGKEEITRDIPNV
SEEALKDLDEAGIIRVGAIIKPGDILVGKITPKGETQLSPEEKLLKAIFGDKAGDVKDTS
LRAPSSVRGTVIDAKVYTREGVELCARSKEIIEQETTLIRRDERIEIKAIQTSSILKIAE
MLKGAKTTDRLVSEDGSSELLPKGAELTGEVLASIPFELIGYLPLEPALEERLSEYFADV
RNRINRVRQKANDEIAKHHRGDELPPGVIKKVTIYVAIKRKLQPGDKMAGRHGNKGVISN
VLPQEDMPFLADGTPVEIVLNPLGVPSRMNIGQLLELHLGWAGRGLGEKMKALIEDQVEM
AEIKDYIYKIYETEEVKNWLKKASDKEVRAVADQLATGVRFSTSAFDGAKEEKIRQMLAL
GDLEENGKTTLFDGITGDAFAEDVTVGAMYMLKLHHLVDEKLHARSTGPYSLVTQQPLGG
KAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDVIGRTRMYESIVKGEQVLEPGLPE
SFNVLIRELQALCLDVKLDETTEEEFFN
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcagttgaaatcttttgaagaatttctacaaaaagatgtgccaccggcacag
agaaaaatggttggtttacaacaagtattccactctgttttcccgattcacgatttcaac
aaaacagtttcattagaatttgttagttatactttggaagagcctaagtactctgttaaa
gagtgtagacaaagaggcctttcgtatgaagcaccacttaaagtggttgttcgtctagta
ttctacgaagtaaacgtagataaagacggaaacgagcaaagaactgtatcttctattaaa
gagcaggaagtttacttaggtaacatccctttaatggctgagacaggttcatttgtctat
aacggaactgagagagttatcgtatctcagcttcacagatctccagggattatttttgag
cacgactcaggtaagaagcactcaagtggtaaattactttactctgctagaattattcca
catagaggttcatggttagacttcgagtttgatcacaagaacgttctattcgcgagaatc
gatagaaaaagaaaattacatgcaactgtagttcttaaggcgatgggatattcaacgaca
gatcttttagaaatgttctatgagatggaaacgttaaatatcaacaaggacgctactttc
actagagagcttgatttctctcttatgattggaacaagagcattaaatgacattcttgat
ccaagttctggaaaagcacttgttaagaaagggaagaaattcactaaagcttctgttaag
aaattaaacgaagctggaattactgaaatttctgctgagctagaagaagtaattggaaaa
gttgctgcggaagatatttttgatgaaaatacaggtgaagttctttgccttgctaacgaa
gcactttcagaagcaaagattcaagaactaatcgctgctggtattactaaagtaaaagta
atctatattgatatgattaactttggtgaccaagtaagaaatactcttcttttagataaa
acagatacaagagatactgcacttatcaaaatctttgaaagactacgtccaggtgagcca
ccgactgtagaagctgcagaacagttatttgataacttattcttcaacgaagagaagtat
gacctttcgaaagttggtcgtatgaaaattaattataaatttggtcttaatgttccagtt
gaaaatactgttcttactaaagaagacattatcatgacggctaaataccttgttgaactc
aacaatggtaaaggtaaagttgatgatattgatcaccttggtaacagaagagtacgtgca
gttggtgaactacttgagaaccaatttagagttggtcttgttcgtatggaaagagctgtt
aaagaaagaatggctatccaagaaatcgaaactatgatgccttacgatctggtaaaccaa
aaaccagtatcagcatcagttaaagaattcttcggatcttctcagctttcacagtttatg
gatcagacaaacccactttctgaagtaactcacaagagacgtctttcagctctagggcca
ggtggtcttactagagagagagcaggtttcgaagttcgtgacgttcactctactcactac
ggtagaatgtgtccggttgagactccagaaggaccgaatattggtctaattacttcactt
gctacatatgcaagagtttctgaatatggatttattgaaactccataccagacagtaaat
gaagatctatcattaggggcagctaagtacttcacagcttttgaagaagaaggaaaagtt
attgctcagattgataataaccatatcgttgatggaaaagttgacggtgaacacgttcct
tctcgtgcggctggtgaatttacacttgtaccaaacgatcaagtagagctaatggacgtt
tcgcctcagcagatgatctcgattgcaacatcattaattcctttccttgagcacgatgat
gccaaccgtgccctaatgggatcgaacatgatgagacaggccgtgcctgttgttagaact
gatgctccaatcgtaggtacaggtatcgaaagtactgttgctagagattcgggtgcaatt
ctatttgcgaagcattctggtagagttatctttgttgactcaaacagaattgttattcaa
agagataagtttgatgaaggtcaatctggtgttgatatttacaaacttgttaaataccaa
agaacaaatcaaaatacttgtaacaaccaaaaagcactagtgaaagaaggtgatgtcgtt
tctaaaggaatggttattgctgatggtcctggtactcacttaggtgaccttgctcttggg
caaaacgttcttgtagcgttcatgccatggggtggttacaactatgaagattcgatctta
attaacgaaagattacttgcaagagatgttttcacttctgttcatatcgaaagttatgaa
gttgaagctagagatacaaaacttggtaaagaagaaattactcgtgatattccaaacgtt
tctgaagaggctttaaaagatcttgatgaagcagggattattagagtaggtgctatcatt
aagccaggtgatattcttgttggtaaaattactccaaaaggtgagactcaactttcaccg
gaagagaaacttcttaaagcaatctttggtgataaagctggagatgttaaggatacttct
ttaagagcaccatcatcagttcgtggaactgttattgatgcaaaagtttacacaagagaa
ggtgtagagctttgtgcaagatctaaggaaatcattgagcaagaaacaactttaattaga
agagatgagagaattgaaattaaagcaattcaaacttcttcaattttaaagattgctgaa
atgcttaaaggtgcaaaaacaactgatagactagtttctgaagatggttcatctgaactt
cttccgaaaggagctgagctaacaggtgaagttcttgcttcgattccttttgagcttatt
ggttacttaccattagagccagcgcttgaagaaagattaagtgaatacttcgcagatgtt
agaaatagaatcaatagagttcgccaaaaagctaacgacgaaattgctaagcaccataga
ggtgatgagttacctcctggagtaattaagaaagttacaatttatgtagcgatcaagaga
aagcttcagcctggtgataagatggccggtcgtcacggtaacaaaggtgttatctctaac
gttcttccacaagaagatatgccattccttgcagacggtactcctgtcgagatcgtactt
aaccctctaggggttccatctcgtatgaatattggtcagcttctagagcttcaccttggt
tgggccggtcgtggtctaggtgagaaaatgaaagctcttattgaagatcaagtagagatg
gccgagattaaggattatatctacaagatctacgagacagaagaagttaaaaactggctc
aagaaagcttccgataaagaagtaagagctgttgcagaccaattagctacaggtgttcgt
ttctcaacttcagcatttgacggtgctaaagaagagaagattagacaaatgcttgctcta
ggagacctagaggagaatggtaagacaacattattcgacggtattacaggtgatgctttt
gcagaagatgtaactgttggagcgatgtacatgcttaagctacaccaccttgtagatgaa
aaacttcacgcaagatctacaggtccttactcacttgtaactcagcaaccacttggtggt
aaggctcagttcggtggtcagagacttggggaaatggaagtttgggcgctagaagcatac
ggtgctgcatatactcttcaagagttcttaacagttaagtcagatgatgtgattggacgt
acaagaatgtatgagtcgatcgtaaaaggtgagcaagtacttgagccaggtcttcctgag
tcattcaacgtacttattcgcgagctacaagctctttgtcttgatgttaagttagacgaa
actactgaagaagaattttttaattaa
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integrated database retrieval system
