Brassica napus (rape): 106364615
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Entry
106364615 CDS
T04128
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106364615
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106364615
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106364615
NCBI-ProteinID:
XP_013659606
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Position
A2:1613950..1616022
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AA seq
481 aa
AA seq
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MEMTRLLKLMFTFYIAGLIPTIRANLSELDEYWSKRAGEAREFTLQAYHSNPYEVVDHFH
ERHYDNSTDVKETEEDSDDEKPEEVEDDVIEMVGNEMNSTRRILRGKPKGKGKGKRKGKW
SKLKGPCTASNPIDKCWRCRSNWAKRRKNLVKCVRGFGHSTIGGKRGRIYVVTSNLDEDM
VNPKPGTLRHAVIQKEPLWIIFKNDMHIRLSQELMICSFKTIDARGTDVHIAHGAGITIQ
FVRHVIIHGLRIHHICQSNGGMIRDSTDHFGMRTKADGDGISIYGSSMIWLDHISMSKCQ
DGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNDNQGDKKMQVTVAYNHFGKGLVQRMPR
IRWGFVHVVNNDYTHWELYAIGGSQAPTILSHGNRFIAPPHKPHYREVTKRDYASEHEWK
HWNWRSDKDMFMNGAYFRQSGNPHFKCHHTRKQMIKPKHGIAVSMLTKYAGALDCRVGKR
C
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggagatgactaggctgttaaagttgatgtttacgttttatatcgccggtctgattccg
accatacgagcaaacctttctgagttggacgaatattggtcgaaacgagctggcgaagcc
cgagaattcacccttcaagcttatcattctaatccttacgaagtcgtcgatcattttcac
gaacgtcactacgacaactctactgatgtaaaggagaccgaggaagatagcgacgacgag
aagcctgaagaggtggaagatgatgtcattgaaatggtaggaaacgagatgaacagcacg
aggcgaatcttaagaggtaaacctaaaggtaaaggtaaaggcaaacgaaaaggaaaatgg
agtaagctcaagggaccgtgtaccgcaagtaacccgatagataaatgttggcgttgccgt
tcgaattgggctaagcgtcgcaagaatcttgtcaaatgtgtccgcgggttcggacacagc
acaataggtggaaagcgcggacgcatctacgtggttacaagcaacctagacgaagacatg
gtgaaccctaagcccgggacgttgcgccacgccgtgattcagaaggaacctctttggata
attttcaagaacgatatgcatattcgtttaagccaagagcttatgatttgtagcttcaag
acgatcgatgcgcgagggactgatgtccatatcgcgcatggcgcagggatcacgattcag
tttgtgagacatgtcattatccatggattgcgtattcaccacatttgccagagtaatggt
ggtatgatccgagactcaacagaccatttcggaatgagaactaaagccgatggagacggt
atatctatatacggttcttctatgatatggcttgaccatatttcgatgtcaaaatgtcaa
gatggactcattgatgccattgttggatctactgccattacaatctctaactctcacttc
actcaccacaatgacgtgatgttgcttggtgcgcaaaacgacaatcagggggacaagaag
atgcaagtcacagtggcttataaccattttggtaaaggacttgtgcagaggatgccaagg
atcaggtgggggtttgttcatgttgtgaacaatgactacactcattgggagctttacgct
ataggaggtagtcaagctccgacgatactcagccatggaaaccgattcatcgctcctcca
cacaaacctcattaccgagaggtgactaagagagattatgcttcggaacatgaatggaaa
cactggaactggagatctgacaaagacatgttcatgaatggagcttatttcagacaatct
gggaaccctcattttaaatgtcatcacacgagaaaacaaatgattaaaccgaaacatgga
atagcggtttctatgctgaccaaatacgccggagcacttgattgcagagtcggaaaacgc
tgttag
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