Brassica napus (rape): 106370831
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Entry
106370831 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106370831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106370831
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106370831
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106370831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
106370831
NCBI-ProteinID:
XP_048599241
LinkDB
All DBs
Position
A10:58148..76780
Genome browser
AA seq
2379 aa
AA seq
DB search
MVMNPSKVAGHARFLLESFSDSEVDSIAQEICQLVEYGVETSIPVLKTCLDCFAARRSHP
NTSQLEKLISLVFKRVLKHSNLISHALQDVEVTDEFVADLTNALDFSISDKISFALSLAE
SDDATAAGRNLLLAMIEQLCANSAQIESTEQVQNILLFLQTSEDLSTHLTSFLQILSSTQ
PKDDFSFALTPILSQQLHQADVLRCIDFHTEFDSILAEIDKEISVGDLMGELGCGVTADA
QQCRDILSCFAPLTEATISRILANVARTCADLEDNHTTFSTFSLVLGCCIPTELSTPMSW
SVDILIETIKQLQAPGTSWRKVIENLDHSGFDIPNKESFSFFMRLYKTASQDPFPLDAVC
GSVWKNVEGQISFLKYAIASPPEVFTFMHSPRKLVYIDDNMHSHEHQLGLSNEAWLSLDL
LDVLCQLAERGHTVLVSSLLQYPLAQCPKTLLTGMTHIKTAYNLIQREVVSAILPVIITN
SQDSGFILNLWHQNTELVLWGILKAQNLKADRILNLIDICHELKVLSVVLESVPISFSIR
LAVLASLRGYLDIENWLPNVLCVYKDLFAEECLKFVKNVHFSESEDFTSQHFHPSDPLSD
VHLDATTSLLKVLKAHDNVITSSQLVDEIEKVNAAILDCNSKLQNGEAKVSSASNAYGDD
IEAEANAYFHQMFSGQLSVDAMVQMLSRYKDSSVQREKSIFDCMIANLFEEYRFFPKYPE
RQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVE
LPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESEAVSNPGPSQSFPGNGEFSGS
GIGQSALQLPLPVQSQQKNEVHINDNSRVPSVPSIEAKTLLPSSSTTSADVSVIPKNPGI
STSSLTSAGIVRPARGPTSTRFGSALNIETLVAAAERRENAIEIPPSDVQDKISFIINNI
STANIESKGKEFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEIL
QNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAYE
KGLMIAVIPFTSKVLEPCQMSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK
NLGVDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPQIIQEPKTISPLKQIDLPL
DVADSPNTDDSSKLLSQYVAPQRVYTNTLMEDEKVSHLGLSDQLPSPQGLFPSTPSPLFS
ISQLSAALPNIGNHVVINQKLSGFALHFPFHRVVPLAMDRAIKEIVSGIVQRSVCIACQT
TKELVLKDYTLEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGMNIK
NEALEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDADIDQQLSLRKKHRDGAGSSLFDP
NMLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQTTQTSHGLSAASSSSGDVG
LSSSYGPASGKSASDFLSSARNARMDNVSQPLDISVEGFESPPVSLLSSQVDPAVDTAGL
QFSKSLSTSELSLVESSDTAMKETGASLQTLTSAATMERLGGNNIIQPSLSTRDALEKYH
IVTQKMEDLVANIAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYDNASSNLH
VSANLAILVAVRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAK
YLDGGRNKSATDFSISLLQSLVTEGSSVISELHSLVDALAKLSSKYGSPESLQQLIDIIR
NPVTNTSDHSNSAIGIENNDKQSKDKKVVCNTTANTEENTNLEFVESESAGFRSRVSTLF
ESWYQICEVSGANETACSQYVLHLHETGLLKGDNTTESFFRILLELSVAHCISSEEISSG
AVQSPQQAQSPSFLIIDIYAKLVFSILKYLPEQESSSKLFLLSEIMAVTVRSIQKDAEDK
KTSLNPRPYFRLFINWLLDLCSLDPGTDGANFQVLSAFANAFHALQPLKIPAFSFAWLEL
VSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVL
LHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAP
CILSEVDAALKAKQMKNDVDEYLALRQQNSAYLSELKQKLLLPSSEASSAGTRYSVPLIN
SLVLYTGIQAIQQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHT
HYFSFIMLYLFFESDQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQA
FIRCAPEIEKLFESVARSCGGLKPPDEGMVSGWVSDNSH
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgaacccgtccaaggtcgcaggccatgcccggttcttactcgagagctttagc
gattccgaagttgattcaatcgcccaagagatctgtcagctggttgagtatggtgttgag
acaagcattccagttctcaagacatgcttagattgcttcgccgcccgtcgaagccatcct
aatacctcgcagcttgagaaactaatatccttggtctttaaacgtgtcctgaaacactct
aatctcatttctcacgcccttcaagatgtcgaggtcactgatgagttcgtggctgatttg
actaatgctctcgacttttcaatctctgacaaaattagctttgctctgtctctagccgag
tctgatgatgcaaccgcagctggtcgaaacttattattggccatgattgagcaactgtgt
gccaattctgcccagattgagtcaaccgagcaagttcagaatattcttttgtttctccag
acatctgaggacctctccacccatcttacttccttcttacagattttgtcttctactcaa
cccaaagatgacttctcttttgctcttactcctatcctttctcaacagcttcaccaagct
gatgttttaaggtgcatcgattttcacactgagtttgattctatcttagctgaaatcgac
aaggaaatttctgttggagatcttatgggagaattaggttgtggtgttactgctgatgca
caacaatgcagagatatcttgtcttgtttcgcaccattaacagaggctactatctcaagg
attcttgctaatgttgctcgtacctgtgctgatctcgaagataaccacaccaccttttca
acatttagtctcgtccttggttgctgcattcccactgaactttccactccaatgtcgtgg
agtgttgacatcttaattgagacaatcaagcaacttcaggctcctggcacaagctggagg
aaagtaatcgagaatcttgaccatagtggatttgatatccccaataaggagtctttctcg
tttttcatgcggctatataaaactgcttcccaggacccgtttcctcttgatgctgtatgc
ggttctgtctggaaaaatgtggaaggtcaaatatcgtttcttaaatatgcaatagcatcc
ccaccagaagtattcacctttatgcattctcccaggaagctggtatatattgacgataac
atgcacagccatgagcatcaattaggactttccaatgaagcatggctatctctcgatctc
ttagatgtcttatgccaactagctgagagaggtcatactgttttagttagttcgctgctc
cagtatccactcgcacagtgtcccaaaaccttgcttactggaatgacacacatcaaaact
gcctataatctcattcagcgagaggttgtttctgctattcttccagtgataattacgaac
tcacaggatagtggttttatccttaatctttggcatcagaatactgagcttgttctgtgg
gggattttaaaggcccaaaatctaaaagcagaccgcatactcaatttaattgatatctgc
catgaactgaaggttctttctgttgttttagaatcggttccaatctcattcagcatcaga
ttggcagtccttgcctcactgagaggctatttggacatcgagaactggttgccaaacgtt
ctatgtgtgtataaagacctctttgcggaggaatgtctcaagtttgtcaaaaatgtgcat
tttagcgaatcagaggattttacttcccaacatttccatccttctgatccgttatcagat
gttcatttggatgcaacgacttcgcttttgaaagttttgaaagctcatgacaatgtgata
acttcatctcaactggtcgatgagatagaaaaggtcaatgcagcaatcttggattgtaat
tctaaactgcagaatggtgaggctaaagtttcatcagcttcgaatgcatatggagacgat
attgaggcagaagcgaacgcttatttccatcaaatgttttcgggtcagttgagtgttgat
gcaatggttcaaatgctttcgcgatacaaggactcctcggttcaaagggaaaaatcaatt
tttgattgcatgattgctaatctgttcgaggaatatcgttttttccccaagtatcccgag
aggcagctaaaaatagcctccatcctttttggctctgttatcaagcaccagcttataagt
tctctcacacttgggatggcactgcgtttagtcttggattctttgcgtaaacctgcagat
tcaaaaatgtttctgtttggaagcaaagctctggaacagttcgtgaatcgtctggttgaa
ttgcctcagtactgtaaccatattttgcaaatatctcatctgcgtagcactcaccccgag
ttagtcactgttattgaacaagcactttcaaggatatcatctggtaatttagaatcagag
gcagtttcgaaccctggtccttcacagtctttccctggaaatggcgagtttagtggttct
ggaattggccagtctgctctccaacttcctttacctgtacagtctcaacagaaaaatgaa
gtgcacattaatgacaacagcagagtgccaagtgtgccatctatcgaagcaaagacactt
ctgccctcttcatctactacttccgctgatgtttctgtcattcctaagaatcctggtatt
tcgacttcttcattaacttcagctggtattgttcgtcccgctcgtggacccacttcgaca
aggtttgggtctgctttgaacatagagaccctggttgcagcagcagagagaagggaaaac
gcaatagagattccaccttcagatgttcaggacaaaatttctttcataatcaataatatc
tctacagccaatattgaatccaaggggaaagagttcgctgagattttgcctcaacagtac
tatccctggttcgctcagtatatggttatgaaaagagcgagcattgagcccaattttcat
gatttgtacttgaaattcttggacaaagttgattccaagctgttgtttaaggagatactt
caaaatacttacgaaaattgcaaggttctcttgggttcagagctcataaagtcaagttcg
gaagagcgatctctgctcaaaaatttaggcagttggcttggaaaattgaccattggaagg
aattatgttttgagggcgcgagaaattgatccaaaatccttaattgtggaggcatatgaa
aaagggttgatgattgcagtcattccatttacttcaaaggttctggagccatgccaaatg
agtattgcgtatcagcctcccaatccttggacaatggctatactcgggttgctcgctgag
atttattcaatgccgaaccttaaaatgaatctgaagtttgacatagaggttttattcaag
aaccttggtgttgatttgaaggaagtagcgccgacttcccttctaaaggaccggaagaga
gaaatagatgggaatcctgattttagcaacaaagatcttggagtaacacatatatctcaa
ccacagataatccaagagccgaaaacaatttctcctcttaagcaaatagacctgcctctg
gatgttgcagattcacctaatacagacgattcctcgaagttattatcacagtatgtagcc
cctcaacgtgtatatactaatactttgatggaagacgaaaaagtttcccatttaggcttg
tctgatcagcttccatcacctcaaggactgttcccgtcaactccatccccattgttttct
attagccagctgtcagcagcacttcccaatattggaaatcatgttgttattaatcagaaa
ttaagcggatttgctctgcacttcccatttcatagagtggtaccacttgccatggacaga
gctatcaaggagattgtgtctggtattgttcagcgaagtgtatgtattgcttgccaaaca
acaaaagaacttgtgctgaaggattataccttggaaccagatgagacacgtatatataat
gcggctcacttgatggttgctagtctagctgggagtttggcccatgtgacgtgcaaggaa
cccctgcgcacttcaatatcaggtcatctacggaattctctccaggggatgaatattaaa
aatgaagctcttgaacaaattgtgcaacttgtcaccaatgacaaccttgatttgggttgt
gctgccattgaacaggcggctacagagaaggcaatacaaactattgatgcggacattgac
cagcaattgtcgttacggaaaaagcatagagatggtgccggatcctccctttttgatccg
aacatgctatcgcagaattctgttagttttataccagagtccctccgtccaaaaccggga
catctatccctgtctcaacagcgagtttatgaggactttgttcagcttccttggcaaaag
cagacaactcaaacttctcacggtttatctgccgcttcaagctcatctggcgatgttggg
cttagtagtagttatggtccagcatcaggtaaaagtgcttcggactttttgtctagtgct
cgaaacgctcggatggataacgtctcccagccattggatatctctgtggagggttttgaa
tctcctccagtttcacttttaagctcacaagttgatccagctgttgacacggccggtctt
cagttctctaaatccctttcgacctctgaattgagcctggttgaatcctctgacaccgct
atgaaagaaactggagcatcattgcagactttgacttcagctgctaccatggagcgtctt
ggtggaaataatattatacagccttctctgtccacgagagatgcactagaaaagtatcat
attgttactcagaagatggaggacttagtggctaatattgcaggagatgatgaaattcag
gctgtagtttctgaagttcctgaaatcatcctcagatgtataagcagagacgaagctgcc
ttggctgtcgcccaaaaagctttcaaggctctttatgacaatgcatcaagtaaccttcac
gtcagtgctaacctagcaattcttgtggctgttcgagatgtttgcaagcgtgttgttaaa
gagctcactagttgggtgatatattcagaggaggagcggaagcttaacaaagacattact
atcggtcttatccaacgcgagttacttaacctagcggagtacaatgtccacatggcgaag
tatcttgatggagggagaaacaaaagcgccactgacttttctatttctctactccaatcc
ttggtcactgaggggtcaagtgtcatttcagagctacacagtcttgttgatgcactggca
aagctttcctcaaaatatggatctcccgagtcattgcaacaactaattgacatcatacga
aatccagttactaacacaagtgatcactctaatagcgcaatcggaattgagaacaatgat
aagcaatcaaaggataaaaaggttgtgtgcaataccaccgctaacacagaagagaacacc
aacttggaatttgtggaatcagagtctgcgggtttccggagtcgggtgtccacacttttt
gaaagctggtatcagatctgcgaagtttctggtgcaaatgaaaccgcttgctcacaatac
gtgttgcatttacatgaaactggactacttaagggagataatacaacagagagttttttc
cgaattcttctggaactttctgttgctcattgtatatcttctgaagaaattagttctggt
gctgtgcaatctcctcagcaagctcagagtccatcattccttatcattgatatttatgcc
aaacttgttttctcgatcttgaagtatctcccggaacaggagtcgagcagcaagttattt
cttctgtcggagatcatggctgttactgtgagatctattcaaaaagatgcagaagataaa
aagacatcactcaatccaagaccttattttaggttattcatcaattggctgctggactta
tgttccttggatcccgggactgatggtgcaaactttcaggttctatcagcttttgccaat
gcattccacgcgttgcagcctcttaagattcccgccttcagctttgcatggctagaactg
gtcagccacagaagctttatgcccaagctacttacagtaaatggccagaaaggttggcca
tatgttcaacgcctgctggtagacttgctccagtttcttgagccatttttgagaaatgct
gaactcggaggaccagttaatttcctatacaaagggacactgagagtgttgctggtgctg
cttcatgactttccggagtttctctgcgattatcattttactttctgcgatgtgattcct
tcaagttgcatacaaatgcgaaatattattctgagttcttttccacggaacatgaggctt
ccagatccatcgaccccaaatttaaagattgatttgctgccggagatagtagaagctcca
tgtatcctttctgaggttgatgctgcgttaaaagcaaagcaaatgaagaatgacgtggac
gagtatctcgctttgaggcaacagaattcagcatacctaagtgaattgaagcagaagcta
ctcctgccgtccagcgaggctagctcagctggaacccgttacagtgtaccattgatcaac
tcgcttgtgctatacactggaattcaggctattcagcagctacaggcgggtgagacacag
gctcaaaatgtggtggccttgcacatgttcaagtatttaagtatggaacttgatacggaa
gggcggtacctgttccttaatgcaatcgccaatcagcttcgatatcccaacaaccacacc
cattacttctccttcatcatgctctatctcttcttcgagtctgaccaggagatcgtacag
gagcagataacaagagtgttgctggaaaggctaattgtgaacaggccgcatccatgggga
ctcctgataacattcatagagctgataaagaatccaagatatggcttctggaaacaagcc
ttcatcaggtgtgcgcctgagattgagaaactctttgaatctgtcgccagatcctgtggt
ggtctcaagccccctgacgagggaatggtctccggttgggtctcggacaactctcattag
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integrated database retrieval system
