Brassica napus (rape): 106371265
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Entry
106371265 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: squalene synthase 1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
bna
Brassica napus (rape)
Pathway
bna00100
Steroid biosynthesis
bna00909
Sesquiterpenoid and triterpenoid biosynthesis
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
106371265
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
106371265
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
bna01006
]
106371265
Enzymes [BR:
bna01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
106371265
Prenyltransferases [BR:
bna01006
]
Terpene biosynthesis
Squalene/phytoene synthase
106371265
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
106371265
NCBI-ProteinID:
XP_013666764
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All DBs
Position
C3:complement(67609853..67613161)
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AA seq
410 aa
AA seq
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MGSLGTFLRYPDDVYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLGT
DLRNAVCVFYLVLRALDTVEDDTSIPTDEKLPILIAFHRHIYDTDWHYSCGTKEYKVLMD
QFHHVAAAFLELEKGYQEAIEEXTKRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL
SKLFLASGSEVLLPDWEQISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRKIWGKYAD
KLEDLKYEENSTKAVHCLNEMVTNALTHIEDCLKYMAALRDPSIFRFCAIPQIMAIGTLA
LCYNNVQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFHDFSCMLKTKVDKNDPNASMTLN
RLEAVQKVCRDTGVLHKRKSYINDKGRSYNVYIVMLVILLAIVFAYLRAN
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggggagcttggggacgtttctgagatatcctgatgatgtatatcctctcttgaagatg
aaaagagcgatcgagaaagcggagaagcagatccctcccgagccacactggggtttctgc
tattcaatgctccacaaggtttctcggagcttctctctcgttattcagcaactaggtacc
gacctccgtaacgctgtgtgtgtgttctacttggttctccgagctcttgatactgtcgag
gatgacacaagcataccaactgatgagaagctgcccatcttgattgccttccaccgtcac
atctacgatactgactggcactattcatgtggcacgaaggagtacaaggttctgatggac
caatttcaccatgttgctgcagcttttctggaacttgaaaaagggtatcaagaggctatc
gaggaanttactaaaagaatgggtgcagggatggccaagtttatctgccaagaggtagaa
actgttgatgactacgatgagtactgccactatgttgctggacttgtgggtttaggtctc
tctaaactcttcctcgcttccggatcagaagttttgttgccagattgggagcagatttcc
aattcaatgggtttatttcttcagaaaacaaacattatcagagattatcttgaggacatt
aatgaaataccaaagtcccgcatgttttggcctcgcaagatttggggcaagtatgctgac
aagcttgaggacttgaaatacgaggagaattcgacgaaagcggtgcattgcttgaatgaa
atggtcaccaatgcattgacgcatattgaagattgcctcaagtacatggctgccttgcgt
gatccttctatatttcggttctgtgctatccctcagatcatggcgattggaacacttgca
ttgtgctataacaatgtacaagtatttagaggcgtggtgaaactgaggcgaggtctaact
gccaaagtcattgatcggacaaagacaatggctgatgtctatggtgctttccatgatttt
tcttgcatgctaaaaacaaaggttgacaagaacgatccgaatgccagtatgacgctaaac
cggcttgaagcagttcagaaagtctgcagagacactggagtccttcataagagaaaatct
tatattaatgacaaaggacgatcatacaatgtctatattgtaatgcttgtgattctactt
gccatagtctttgcatatctcagagcaaactga
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