Brassica napus (rape): 106375788
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Entry
106375788 CDS
T04128
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106375788
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106375788
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106375788
NCBI-ProteinID:
XP_013671234
UniProt:
A0A816R849
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Position
C1:complement(13101547..13103500)
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AA seq
406 aa
AA seq
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MQTNKLFISIVSFLLYAPLMFSSPVPDPEAIVEEVHKSINASVAARRKLGYLSCSTGNPI
DDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVI
QDEPLWIIFQRDMTIHLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHLH
DCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCDDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGASSSSYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaaataagctctttatctccatagtctccttccttctctatgctccattgatg
ttctcttcaccagttccagacccagaagctatcgtcgaagaagttcacaagagcattaat
gcgtcggttgcagcaagaaggaagctaggctacctctcatgttccaccggtaaccctatc
gacgactgttggcgatgcgactcaaactgggagaaaaaccgccaacgtctcgccgactgc
gccatcgggttcggcaagaacgccatcggcggccgtgacggtcgtatctacgtggtgacc
gactcaggaaacgacgacccagtgacccccaagcccggaacgttaagacacgccgtgatt
caagacgagcccttatggatcatcttccagcgagacatgaccattcatctcaaagaagag
ctcatcatgaactctttcaagaccatagatggtcgtggcgcgtccgtgcacatcgctggt
gggccttgcatcacgatccagtacgtgaccaacattatcatccacgggattcatttacac
gactgcaagcaaggtgggaacgctatggtgcgaagctccccacggcatttcgggtggaga
acgatatcggacggtgacggcgtgtctatcttcggagggagtcatgtttgggttgatcat
tgttcgttgtctaactgtgacgatgggcttattgatgctataatgggctcgacggctatt
actttgtctaacaattacatgacgcatcatgataaggtcatgttgcttggtcatagtgat
acttacactcgtgacaagaatatgcaaatcaccattgcttttaaccattttggtgaagga
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaatgactac
acacattgggagatgtacgcgattggtggaagtgctaatcctactatcaatagtcaaggg
aacagatttgtggccccgaatatcagatttagcaaagaagtgactaagcacgaggacgcg
ccggaaagcgagtggaagagctggaactggagatcatctggtgatttgttgctaaacggt
gcgttttttacgccttctggtggtgcttcctcttctagctatgccaaggcttccagtctt
ggggctcgaccgtcttctctcgttggcccgttgacggttggttctggtgcgctgaattgc
cgcaagggttcacgttgctga
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