Brassica napus (rape): 106379864
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Entry
106379864 CDS
T04128
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106379864
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106379864
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106379864
NCBI-ProteinID:
XP_013675175
UniProt:
A0A816KCT9
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Position
C2:complement(9412248..9414012)
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AA seq
387 aa
AA seq
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MSIVCTIFLFLLTASSAFASAFPKPAPVTQWSTSETSNSTSSCSATGNPIDDCWRCDKKW
KSNRKSLADCAVGFGRDSVGGRAGEFYTVTDSGDEDPLNPSPGTLRYAATQDQPLWIIFD
RDMVITLKEDIQVTSYKTIDGRGNNVQIAYGPCLALYQVSNVIIHNIYIHHCVPAKRSLG
GYSDGDGISIFESRDVWIDHCTLEKCHDGLIDAVGGSTDITISNNYMLNHNEVMLLGHSD
EFEGDRDMRVSIAFNYFGEGLVQRMPRCRHGFFHIVNNIYREWEMYAIGGSANPTIFSQG
NVFIASDNQFTKEVTKRESVDGDDEWKEWNWKSEGDEMLNGAFFTPSGNEDSPSYTKMSS
MVARPASLLKTTHPSVGVLSCQIDQPC
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtctattgtatgtacaattttcttgtttctcttaaccgcttcttccgcgtttgcgtct
gcgtttcctaaaccggcacccgtaacgcaatggtcaacatcagagacatcaaactcaaca
tcttcttgctcagcaactggaaatccaatcgatgactgctggagatgcgacaagaagtgg
aaatccaaccgcaagagcctcgcggactgcgcggttggattcggacgcgactcggtaggc
ggtagagcaggggagttctacaccgtcacagattcaggagacgaggatcctctaaaccca
tctccaggtacattacgttacgccgcaacacaagaccaacctctatggatcatattcgat
agagacatggtaataacactaaaagaagatattcaagtgacttcatacaaaaccatagac
ggtagaggaaataacgtgcagatagcttatggaccgtgtttagctttgtatcaagtaagt
aacgttatcatacacaatatttacatccaccattgtgtaccggcgaaacggtcgttggga
ggatattctgatggagatgggatctcgatattcgagtcacgagatgtttggattgatcat
tgtacgttagagaagtgtcacgatgggcttattgatgcggtgggtgggtcgacggatata
acgatttcgaataactacatgttgaatcataatgaagtcatgcttttgggtcatagtgat
gagtttgaaggtgatcgagatatgagggtttcgatcgcgtttaattattttggtgaagga
cttgtccagcgaatgcctaggtgcaggcatggattttttcacattgtgaataatatttat
agagagtgggagatgtatgcaattggtggaagtgctaatccaaccatttttagtcaagga
aatgtttttatagcttcggataatcagttcacaaaggaggttacaaagcgagagagtgta
gatggagacgatgaatggaaggaatggaattggaaatcagaaggagatgaaatgctaaac
ggtgctttctttacaccatcagggaacgaggattctcctagctatacaaaaatgtcgagt
atggtagctcggccagcttcacttcttaagactacacatccatcagtaggtgttcttagt
tgccaaattgaccaaccttgttag
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