Brassica napus (rape): 106383003
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Entry
106383003 CDS
T04128
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106383003
09122 Translation
03013 Nucleocytoplasmic transport
106383003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106383003
03041 Spliceosome [BR:
bna03041
]
106383003
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106383003
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106383003
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106383003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
106383003
NCBI-ProteinID:
XP_013678566
LinkDB
All DBs
Position
C2:1553007..1556811
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AA seq
609 aa
AA seq
DB search
MDAFRDSILQRGPIESFALKTVQDFIQPQRQTKLAQDENQMLENMLRTLLQQLVASAAQS
GEQIMQYGQLIDDDDDDDKNVHGHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMST
MKNCKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAH
FFPLSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTTAST
KWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRR
HILLQCLILFDYLRAPGKNDKDLPSETMKEELKSCEDRVKKLLEITPPKGKEFLRAVEHI
LEREKNWVWWKRDGCQPFEKQPIENKSPNAGHKRRRQRWRLGNKELSQLWRWAEQNPNAE
KDSQRVKTPDIADYWKPLAEDMDPSAGIEDAYHHKNNRVYCWKGLRFAARQDLEGFSRFT
DLGIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKDETKGGSLEEETKAVSAEGALVGGST
SEAEGEVGRGESEAMESDAIADTPTPEEQQRLGGSDTDNGQEAGQIEEAETEEGGLMDTD
LNHPPMPIS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgtttagagattcgatactgcagcgaggtccaatcgaaagctttgccctcaaa
accgttcaagattttatacaacctcagagacaaacaaagttggctcaagatgagaatcag
atgcttgaaaacatgctccggacattgcttcaacagcttgtggcttctgctgctcaatca
ggagagcagatcatgcagtatggtcagttgattgatgatgatgatgatgatgataaaaat
gtacatggacatggacagattcctcatcttctagatgtggtgctttatctatgtgagaaa
gagcatgtggaaggtgggatgatattccagctgctggaggatttgactgagatgtctact
atgaagaactgtaaagatgtttttggttatattgagagcaaacaagatatattgggaaag
caagagctttttgcgcgggggaaacttgttatgttgaggacttgtaaccaacttctccgg
cgactctcaaaggctaatgatgtggtgttttgtggaaggattcttatgttcttggctcat
tttttcccattatctgagcgctcagctgtgaacataaaaggagtttttaatacatctaat
gaaaccaaatatgaaaaagatcctccaaaaggaatttctgtagatttcaacttctacaag
acattttggagtttacaggagtatttctgtaatcccgcttctcttactaccgcatctacc
aagtggcagaaattttcatctagtttggcggttgtgttaaatacctttgacgctcaacca
ctaagcgaagaagagggagaggctaacagtttggaggaggaggctgcaaccttcaatata
aaatacttgacaagtagtaaactaatgggtttagagttgaaggattcgagcttccgaaga
catattcttctccagtgcctcattctgtttgattacttgagggcaccaggaaagaacgac
aaagatctgccatctgaaaccatgaaggaggaactcaagtcatgtgaggatcgtgtcaag
aaactgcttgagataactccccctaaagggaaagagtttctccgtgcagttgagcatata
ctggagcgtgaaaagaattgggtgtggtggaaacgtgatggatgccaaccatttgaaaag
caaccgatagagaacaaatcacccaatgctggacacaagagacggaggcaaagatggagg
ttgggcaataaagaactctcccaactctggagatgggctgaacaaaatccgaatgctgag
aaggattctcaacgtgtaaaaaccccagacattgcagactactggaaaccattagcagaa
gatatggatccatcagctggcatagaggatgcgtaccatcataaaaacaatagagtatac
tgctggaaaggtcttcggtttgcagctcggcaagacctggaaggattctctaggtttact
gatctgggaattgaaggagttgtccccgttgagctcttgccacctgaggtccggtccaag
taccaagctaaaccgaacgagaaagccaaacgtgctaagaaggatgaaaccaaaggtgga
tctctggaagaagaaaccaaagcggtatcagcagagggagccctggttggtggttctact
agtgaagctgaaggtgaagttggaagaggcgaatcagaggcgatggagagtgatgctatt
gcagacactcctacccctgaggaacaacaaagactcggtggttctgacacggataatggt
caagaggcgggacagatcgaagaggcggagacagaggaaggtggtttgatggacactgat
cttaatcatcctcccatgcctatctcttga
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