Brassica napus (rape): 106389773
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Entry
106389773 CDS
T04128
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X2
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106389773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106389773
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106389773
Chromatin remodeling factors
NuRD complex
106389773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Helicase_C
Chromo
DUF1087
HDA2-3
ResIII
PHD
CHDCT2
DEAD
Myb_DNA-binding
zf-HC5HC2H
C1_1
PHD_2
PHD_4
zf-PHD-like
zf-HC5HC2H_2
C1_2
Motif
Other DBs
NCBI-GeneID:
106389773
NCBI-ProteinID:
XP_013685569
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All DBs
Position
C8:complement(42184093..42192366)
Genome browser
AA seq
1365 aa
AA seq
DB search
MSSLVERLRLRSDRKPVYNLDESDDEDYAPKKDRTFEQVEAIVRTDAKENACQACGESAN
LVSCNTCTYAYHAKCLIPPLKDASVENWRCPECVSPLSEMDKILDCEMRPTISDEQDSSD
AAPKQVSVKQYLVKWKGLSYLHCSWVPEKEFVKAYKTNHRLKTRVNNFHRQKLESSNNNE
DDFVAIRPEWTTVDRILAYREEDGEEQYLVKYKELSYDECYWESESDISTFQNEIQRFKD
INSRTRRGSKDVDHRRNPKDFQQFDHSPEFLKGLLHPYQLEGLNFLRFSWSKQTHVILAD
EMGLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTSQAR
AVIREHEFYFPKGQQKMKKKKSGQSSSENKQKRIKFDVLLTSYEMINLDTAVLKPIKWEC
MIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEE
FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSEQKEYYKAI
LSRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKKLVESCGKLQ
LLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKEWSYERIDGKVGGAERQIRIDRFN
AVNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQRNKVMIYR
LINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFASEDDEAGK
SGKIHYDDAAIDKLLDRDIVDAEEVAVDDEEENGFLKAFKVANFEYIDENEAAALEAQRV
AAENKSSAGERASYWEELLKDKFEVQQAEELNALGKRKRSRKQLVSVEEDDLAGLEDVSS
DGDESYEADSTDGEAPGQGIQTGRRPYRRKGRDNSEPTPLMEGEGRSFRVLGFNQSQRAI
FVQTLMRFGVGNYDWKEFVPRLKQKTYDEIKEYGVLFLKHIAEDIDENSSTFSDGVPKEG
LRIEDVLVRIAVLMLVQEKMKLVEDHPGKPVFPNRILERFPGLRSGKVWKEEHDKIMIRA
VLKHGYGRWQAIVDDKGLGIQELICKELNFPHISLSAAEQAGLQGQNGSGSSNLGAQNHG
GGVTGNSNASPADAGQVNSMFYYRDMQRRLVEFVKKRVLLLEKALNYEYAEDYYGLGGSS
SVPSEEPEAEPKVTDTVGASFIEVDDEMLQALPKTEPITSEEIMVAAADNNQERVEIAQL
YNKMCKDLDENARESVQAYVNNQPSNGKLGECFRSIESNISRILSAPSDQLKSNEDTKPN
LNNVEMDSVEETKPLRASVDLNVLEGEENTGEASGSVDVKMEEAK
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcttagtggagaggcttcgtttaagatcagacaggaaaccagtttacaaccta
gatgagtctgatgatgaggactatgctcccaaaaaagacaggacctttgagcaagttgag
gctattgtcagaaccgacgcgaaagaaaatgcatgccaagcttgtggcgaaagtgcaaat
cttgtgagctgcaacacctgcacttacgcttaccatgctaaatgccttattccgcctctt
aaggatgcttctgttgagaattggagatgccctgaatgcgttagtcctcttagtgagatg
gataagatattggactgtgagatgcgtcctaccatatccgatgaacaagactcctccgat
gcggcaccaaagcaagtttctgtgaaacagtatctcgtcaagtggaagggattatcatac
cttcactgctcttgggtgcctgagaaggagtttgtcaaggcttataagaccaatcaccgt
ctaaaaaccagggtgaacaactttcaccgtcagaagctggaatcatccaacaacaacgaa
gatgatttcgtcgccattcgtcctgagtggaccaccgttgatcggattctcgcctacaga
gaagaagatggcgaggagcaatatctcgtaaagtataaagagctttcttatgatgagtgt
tattgggaatcggaatcagacatctcgacgttccagaatgagatccaaaggttcaaggat
atcaattccaggactcgcagaggtagtaaagatgtcgaccatagaagaaatcccaaagac
tttcaacagtttgatcatagtcctgagttcctcaaaggtttgttgcatccctatcagctt
gaggggctcaattttttgcgcttctcgtggtcaaagcagacacatgttatccttgctgat
gaaatggggctaggcaaaacaattcaaagcattgcccttttagcttcgcttttcgaggag
aacctcatcccgcatttggtgatcgctccactctcgactctgaggaactgggagagagag
ttcgccacatgggccccgcagatgaatgtggttatgtatttcggcacttcgcaagctcga
gccgttattagagaacacgagttttactttcccaaaggccagcaaaagatgaagaagaag
aaatctggacaaagcagtagtgaaaacaagcaaaaaagaataaagtttgatgtcctcctc
acatcgtatgagatgatcaacctagacacagcagttcttaaaccaattaagtgggaatgc
atgattgttgatgaaggccatcgactgaagaataaggattcaaagctgttctcttcgttg
acgcagtattcaagtaaccatcgtatccttctgacaggaacaccacttcagaacaacttg
gatgaacttttcatgctcatgcattttcttgacgcggggaagtttggcagtttagaggag
ttccaggaggagttcaaagatattaatcaagaggagcagatttcaagactccacagaatg
ttggctccacatttgctcagaagggtcaagaaagacgtaatgaaagacatgccccctaag
aaggagctcattttgcgtgttgatttaagcagcgagcaaaaagaatattacaaggctatt
ttgtctcgtaactatcaagtattgaccaaaaaagggggcgctcaaatttctcttaataac
ataatgatggaactgcgaaaagtttgctgccatccttacatgctggaaggtgttgaacct
gtaattcacgacgcaaatgaagctttcaagaaacttgtggaatcttgtggaaagctgcaa
ctgttagacaaaatgatggtcaagctgaaagagcaaggacaccgagttctcatatacaca
cagttccagcacatgcttgacttgcttgaagactattgttcctataaggaatggagttat
gagcgaatcgatggaaaggttggaggagctgagcggcaaatacgcatagatcggtttaat
gccgtaaactctagcagattctgttttttgctctccacaagagctggtggcttaggaatt
aatcttgcaactgccgatacagtaatcatatatgacagtgactggaaccctcatgctgat
ctacaggctatggctagagcacatcgacttggccaaagaaataaggtgatgatttacaga
ctcataaaccgaggcaccattgaagaaaggatgatgcagttgaccaaaaagaagatggtt
ctagagcatcttgttgttgggaaactgaaaacacagaacatcaatcaggaagagttagat
gacatcatcaggtatggttcaaaggagctttttgctagcgaagatgacgaagcagggaag
tccggaaaaattcattacgatgatgcggctatagacaagctgcttgatcgtgatatcgta
gatgcagaggaggtcgcagtggatgatgaagaggagaatggattcttaaaggcttttaag
gtggcgaattttgagtatatagatgaaaatgaggcggcagcattggaggcacagagagtt
gctgcggaaaacaaatcttcagcaggcgaaagggcaagttattgggaggagttgttaaaa
gacaaatttgaggtgcagcaggctgaggagcttaatgctcttggaaagaggaaaagaagt
cgcaaacagttggtatctgtggaagaagatgatcttgctggtttggaagatgtgagctct
gatggagatgaaagttacgaagccgattcaacagatggtgaagcacctggacaaggaatt
cagacgggaagaaggccataccgaagaaagggcagagataactcggagccaactcctttg
atggaaggcgaagggaggtcttttagagtactcggtttcaaccagagtcaaagggccatt
tttgtacagacgttgatgaggtttggagttggaaattacgactggaaggagtttgttcct
cgcttgaagcagaagacctatgacgaaataaaagaatacggagtactcttcttgaagcac
attgctgaagatattgacgaaaactcttcaaccttttcagatggtgtgcccaaggaagga
cttagaattgaagatgttctagtcagaattgctgttcttatgcttgtacaggagaagatg
aaacttgtagaagatcatccagggaaacctgttttccccaaccgcattcttgaaagattc
ccaggactgagaagtggaaaagtgtggaaggaggaacatgacaaaataatgattcgtgct
gttttaaagcatgggtacggacgctggcaagctattgttgatgacaaagggttggggatc
caagagcttatctgcaaagaactgaatttccctcacataagtttgtctgctgcggagcaa
gctggcttgcaagggcaaaacggtagcggaagctccaatctgggagcacagaatcatgga
ggtggtgttacggggaacagtaatgcttctcctgctgatgcgggccaagtaaactccatg
ttctactaccgagacatgcagagaagacttgtcgagtttgtgaaaaagcgagttctgctt
ctggagaaggcgttgaactacgaatatgcagaggactattatgggcttggcggctcatcg
tctgtgcctagtgaagaaccagaagctgaaccaaaggtcactgacacagtgggggccagc
tttatcgaggtcgatgatgaaatgcttcaggcacttcccaagactgagcccatcacttca
gaagaaattatggttgctgctgctgacaacaaccaagagcgggttgagatagcccaactt
tataacaagatgtgcaaagatttagatgagaacgctcgtgaatctgtccaagcatatgtg
aacaaccaaccgtctaatggcaaactgggtgagtgcttccgttccatagaatctaacatt
agcagaatcctttcggctccatctgatcaactcaagtctaatgaagacaccaagccgaac
ctaaacaatgttgagatggactcggtcgaagagacaaaacccttgagagcaagcgtcgat
ctgaatgtgttggagggagaggagaacactggagaagctagtggaagtgttgatgtgaag
atggaagaagccaaatga
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