KEGG   Brassica napus (rape): 106397248
Entry
106397248         CDS       T04128                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106397248
  09122 Translation
   03013 Nucleocytoplasmic transport
    106397248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106397248
   03041 Spliceosome [BR:bna03041]
    106397248
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106397248
Spliceosome [BR:bna03041]
 Complex C
  Other components
   EJC/TREX
    106397248
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106397248
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N DSE1_N Beta-prop_IFT140_1st Beta-prop_WDR75_1st eIF2A Beta-prop_HPS5 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_RFWD3 NBCH_WD40 Tricorn_2nd Beta-prop_DCAF12 WDR90_beta-prop_4th TRM82_WD Beta-prop_ELP1_1st Beta-prop_IFT122_2nd Beta-prop_NUP159_NUP214 CFAP251_N PAC11 PSII_BNR Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_WDR11_1st PROPPIN DUF7099 WD_LRWD1 PD40
Other DBs
NCBI-GeneID: 106397248
NCBI-ProteinID: XP_013693288
LinkDB
Position
A10:complement(10415373..10418132)
AA seq 321 aa
MEETIPFKNLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVKDLE
LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPDGT
HIAVGNRDDELTILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPL
EKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDS
PVRTISFNHSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGD
DKSAKYYGDEGVFRIFGFDSS
NT seq 966 nt   +upstreamnt  +downstreamnt
atggaggagactattcctttcaagaatcttcatagcagagagtatcaaggtcacaagaag
aaggtacattcggtggcttggaactctaatgggacaaagcttgcctctggttctgttgac
caaaccgctcgtgtttggaccatcgaaccacacggtcatagtaaggttaaggaccttgag
ctaaagggacatactgacagtgtggatcagctatgttgggacccaaaacattcagatctt
gttgcaactgcctctggtgataagagcgttcgtctctgggatgctcgcagtggaaaatgc
acgcagcaggcagagcttagtggggagaatataaacatcacctacagacctgacgggaca
catatagctgttggtaatagggatgatgagcttaccattcttgatgttcgcaagtttaat
aaatccctatacaagcgcaaattctcatatgaggtaaatgagattgcttggaacatgtca
ggagatctgttcttcttgactactggtcttggcactgttgaagttctttcatatccactt
gagaaaatgcaaaatgatcttaaaccagttgacactctcactgcccacacagccgggtgc
tactgcattgccattgatcctaaaggaagatactttgctgttgggagtgctgattcttta
gtcagcctttgggatatgtcagacatgctttgtttgagaacatttacaaaacttgactcg
cccgtcaggacaataagcttcaaccattcaggagaatacattgcttcagctagtgaggat
ctatttatagatattgcaaacgtccaaactgggcggacggtgcatcaaattccatgtcga
gctgccatgaacagcgtggagtggaatcccaaatacaacttacttgcatatgcaggtgat
gacaagagtgccaagtattatggtgatgaaggtgttttccgaatatttggttttgatagc
tcgtag

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