Brassica napus (rape): 106409464
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Entry
106409464 CDS
T04128
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106409464
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106409464
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106409464
NCBI-ProteinID:
XP_048616603
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Position
C6:25127818..25132947
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AA seq
491 aa
AA seq
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MPPPHLSISILLLCLFFFTLLEATKPLNLTLTLPHQHPSPDSVALHVTRTINASLSRRQL
TSSSTCGTGNPIDDCWRCDSSDWSSNRQRLADCSIGFGSGTLGGKNGRIYVVTDSSDNNP
ANPTPGTLRYAVIQEEPLWIVFSSSMFIRLKQELIINSYKTIDGRGAAVHITGNGCLTIQ
YVQHVIIHNIHIYDCKPSGGAVVAASPTKVGRRGRSDGDGISIFGSQKIWVDHCSLSHCT
DGLIDVVLGSTAITISNNYFTHHDEVMLLGHDDKYVLDTGMQVTIAFNHFGQGLVQRMPR
CRRGYIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSTDDGEWA
NWNWRTEGDLMENGAFFVASGEGVSTLYSKASSVEPKAAALVDQLTQNAGVFGGPRDDQG
QSGDSYSGYGGGGDGGTGAIGGTSRGSSSNGDNNFFGMIFGNNAPPRPRLTLLLLPLLMI
CVLSTSTLLLW
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcctcacttgtccatttccattctcctcctctgcctcttcttcttcacactt
ctcgaagctacaaaacctctaaatctcactctcactctccctcaccaacacccttctcct
gactccgtcgctctccacgtcacaagaacaatcaatgcatccctctcacggagacaactc
acctcctcctccacatgcggtaccggaaacccaatcgacgactgctggcgctgcgactcc
tccgactggtcctccaaccgtcaaagactcgccgactgctcgatcggcttcggctccggc
accctcggcggcaaaaacggtcggatctacgtcgtcacagactcttccgacaacaacccg
gcgaacccaactccgggcacactccgctacgccgtcatccaagaagagcccctctggata
gtcttctcctccagcatgttcatccgcttaaagcaagaactcatcatcaacagctacaag
accatcgacggccgtggagccgccgtccacatcaccggcaacggctgcttaaccatccag
tacgtgcaacacgtcatcatccacaacatccacatctacgactgtaaaccttccggagga
gccgtcgtcgccgcttcgcccacgaaagtcgggaggagaggtagatctgacggcgacggg
atctctatcttcggatctcagaagatctgggtcgaccattgctccttgagtcattgtacc
gatgggcttatcgatgtggtgttgggctcgacggcgataacgatatcgaacaactacttc
actcatcacgatgaggtgatgctgttgggtcatgatgataagtacgtgctggatacgggg
atgcaggtgacgattgcgtttaatcatttcggacaagggcttgttcagaggatgccgagg
tgtcggagagggtatattcatgtcgtgaataatgattttacttcgtggaagatgtatgct
attggtggtagtggtaatcccactattaacagtcaagggaatcgttactctgctccttct
gatcctagcgccaaagaggtgacgaagcgagtggattcgacagacgatggtgaatgggcg
aattggaactggagaacagaaggagatttgatggagaacggagctttctttgtggcgtct
ggtgaaggagtgagcacactgtactctaaagcttcgagtgttgagcctaaagctgcggct
ctcgtagaccagctcactcaaaacgctggcgttttcggcggtcccagggatgatcaaggt
cagagcggcgattcttattctggttatggaggcggcggcgatggagggacgggcgctata
ggtggtacgtcaagaggaagcagcagcaatggtgacaacaatttcttcgggatgatattc
ggaaacaatgcaccgcctcgaccacgtttaacgttattgttgttgcctttgttaatgatt
tgtgttttgtcgacatcaactctattattgtggtag
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