Brassica napus (rape): 106417790
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Entry
106417790 CDS
T04128
Name
(RefSeq) probable pectate lyase 15
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106417790
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106417790
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106417790
NCBI-ProteinID:
XP_013713990
UniProt:
A0A816ZMN6
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Position
A8:complement(5028143..5032089)
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AA seq
451 aa
AA seq
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MASPSRKLTSVCLAVIVLLALTATIFRKLEIPSSRKLKTEELRSAKNNSTMAAKRVKGVE
LNEQHAVSDPDRVADEVASLVQMSEHNKTARRKLGFFSCGTGNPIDDCWRCDPNWHKNRK
RLADCGIGFGRNAIGGRDGRFYIVTDPTDDDVINPKPGTLRHAVIQEEPLWIVFRRDMVI
ELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPS
HFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVML
LGHSDSYTKDKLMQVTIAYNHFGKGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPT
INSQGNRYAAPINRFAKEVTKRVGTDASDWKKWNWRSEGDLLLNGAFFRASGAGTSASYG
RASSLAAKPSSMVRTITSTAGALGCRKGRPC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccttctcggaaactgacctctgtttgcttggccgtcatcgtcctcttagct
ctcaccgcaacgattttccggaagcttgaaatccctagctccaggaagctgaaaacagag
gagctgcggagcgcaaagaacaactcgacaatggctgcgaaaagggttaaaggtgtggag
ttgaatgaacaacacgcggttagtgatccagatagggtcgctgatgaagtcgcttcgctt
gttcagatgagtgaacataacaagacagcaaggaggaagctaggattcttctcttgtgga
accggtaatccaatcgatgactgctggcgttgtgaccctaactggcataagaaccgtaaa
cgactcgccgattgtgggattggttttggacgcaacgcaattggtggtcgtgatggacgc
ttctacattgtcactgaccccactgatgatgacgttattaaccccaaaccaggaactcta
cgccatgctgttatccaggaggagcctctgtggatcgtgttcaggagagacatggtgatt
gagctgaagcaggagctgattatgaacagtttcaagaccattgatgctcgtggctccaat
gtccatatagccaatggtgcttgcatcactatccagtttatcaccaatgttatcattcat
ggtcttcacattcatgactgcaaacctactggaaacgcaatggttcgaagctccccatct
cattttggttggaggacaatggctgatggcgatgcagtctctatctttggatcgtctcat
atctggattgatcataactctctctctcactgtgctgatggccttgttgacgctgtcatg
ggttccactgctattaccgtatccaataaccactttacacaccacaatgaggtgatgttg
ctaggccacagtgattcgtacacaaaagacaagctgatgcaagtgaccattgcttacaac
cattttggaaaaggactggttcagagaatgccaaggtgcagacatgggtatttccatgtg
gttaacaacgactacacacactgggagatgtatgccattggtgggagtgcagagccaacc
atcaacagtcaaggaaacagatatgctgctcctatcaatcgtttcgccaaggaggtaacg
aaaagagtagggacggatgcaagtgactggaagaagtggaactggaggtcggaaggagat
cttctactgaatggagcattcttcagggcatcaggagcaggaacttcagctagctatgga
cgagcctcaagcttagcagctaaaccatcatcaatggtccgtactataacctctactgca
ggagcactaggttgccgcaaaggcaggccttgctag
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