Brassica napus (rape): 106424219
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Entry
106424219 CDS
T04128
Name
(RefSeq) probable pectate lyase 1 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106424219
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106424219
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
XFP
Motif
Other DBs
NCBI-GeneID:
106424219
NCBI-ProteinID:
XP_013720426
UniProt:
A0A816U9J9
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Position
C8:complement(1254268..1257130)
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AA seq
431 aa
AA seq
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MTVLPTWILAMMCLFFFVGAMENKTHDKISSLSKSDQIEWNKHAVTNPDEVADEVLALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQFVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFESSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTEDRAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLAAKSSSLVATITSDAGA
LPCRRGSQCSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacggttcttccgacatggattttagctatgatgtgtctattcttcttcgtcggagca
atggagaacaaaacacacgacaagatctcatctctctccaaatcggaccaaatcgaatgg
aacaaacacgcagtgacgaatccagatgaagtagcggacgaagttctcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctgggttactttacttgcggaacaggc
aaccccatcgacgattgctggcgttgcgatcgcaactggcacaagaaccgcaaacgccta
gcggactgcggaatcgggttcggaagaaacgcgatcggcggtcgcgacgggcgtttctac
gtggtcactgacccaagtgaccacgacgctgttaaccctagaccgggtacattacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgtgatatggtgattcagcta
aaacaagagctcatcgttaacagcttcaaaaccatcgacggacgtggcgcaaacgttcac
atcgctaacggcggttgcataacgattcagtttgtgacgaacgttatagtccatggattg
catattcatgactgtagaccgaccgggaacgctatggtgagaagctcggagacgcatttt
gggtggaggacgatggcggatggtgacgcgatttcgattttcgagtcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgcagtcatgggctcg
acggccattaccatctctaacaaccacatgactcaccacaacgaggttatgttgctcgga
catagtgattcttatacggaggatagagctatgcaagttaccatagcttataaccatttt
ggggtcggacttattcaaagaatgccaaggtgtcgacatggttatttccatgtcgtgaac
aatgactacactcactgggagatgtacgccatcggtggaagcgcaaacccgacaattaac
agtcaaggaaaccgctacgccgctcctaaaaatccttttgctaaagaggtgacaaagaga
gtggacacaccggcgagtcactggaaaggatggaactggagatcggaaggagacttgctt
cagaacggagcttacttcacttcttcaggagccgctgcatctggcagctacgcacgtgca
tctagcctcgccgctaaatcttcttcattggttgcaaccattacttctgacgctggagct
ctaccttgtcgcagaggtagtcaatgttcctcgtag
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