Brassica napus (rape): 106426027
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Entry
106426027 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106426027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106426027
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106426027
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106426027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
106426027
NCBI-ProteinID:
XP_022566800
LinkDB
All DBs
Position
C8:complement(48677719..48690705)
Genome browser
AA seq
2369 aa
AA seq
DB search
MLMVPSKVAGHTRFLLESFNGSDVDSIAQEICQLVDVGIETSIPALKTCIDCFTVRRSHP
NALQLEKLVSLVFKRVLNNSNNLQTLISHALQDVEVTDDFVDDLTNALGFSIPEKVSVAL
VLADSERSDAKSSGRNLLLAEIEQLCATPGQLESTEQIQNVVLFLQQSEDLSSHLDSFLR
ILSSAQPRDDFSFALTPFLSPQDHQSYVFSDNEIEAILDEIDKELAVGDLMGELGCGLTA
DAQQCKEILSTFAPLREAAIARILANVARACPDREDNHTTFPTFALALGCCLPTELPTPR
SWNADILIETIIQLAPATSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAV
CASVWKNMEGQLSFLKHAIAAPPEVFTFTHSPKKLVYVDNNMHSHEQQLGLSNQAWLSLD
LLDVLCQLAERGHTVLVSSLLHYPLTHCPKTLLLGMAHIKTAYNLIQREVLSVVFPLIIT
NSQDSGFILHLWHQNAELVLWGILNAQNLKVDSILRIIEICHELKILSVVLESVPVSFSI
RLAALASLRGFLDIENWLPNCLYVYKDTFAVECLKFVKNVHFNQSEDFTSKHFHPSDPLS
DLHLDATALLLKVLKAHDNVITSSQLVEDIEKVNAAILDCNSKLQNGEAKDSSASNAYGE
DVEAEANAYFHQMFSGQLSVDAMVQMLSLYKDSLVQREKSIFECMIANLFEEYRFFPKYP
ERQLKIASILFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLV
ELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGLSQSFPGNGEFG
SGIGQSALQLPSPVLPQQTNEVHIDDRSRVPSVPSNEAKPLLPSSSNISVDVSVTPKNPG
ISTSSSTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINN
ISLANIESKGKDFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEI
LQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLRAREIDPKSLIVEAY
EKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLF
KNLGVDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPPIIQEPKTISPLKQIDLP
IDVANTDIPSKLLSQYVAPQRVYANTLMEDEKVATLGLPDQLPSPQGLFPSSPSPLFSTS
QPPALPNIGNHVVINQKLSGFGTHFPFPRVVPLAMDRAIKDIVSGIVQRSVCIACQTTKE
LVLKDYALEPDETRIYSAAHLMVASLAGSLAHVTCKEPLRTSISGHLRSSLQGNIKNEAL
EQIVQLVTNDNLDLGCAAIEQAATEKAVQTIDADIAQQLLLRRKPRDGAGSSLSQNSVSF
IPESLRPKPGQLSLSQQRVYEDFVQLPWQKQSTHTSHGLSAASSSSGEVGLGSNYGPVSG
KSASDSLSGAEHARMDMVSRASDLSVEGFESPVSLLSSQVDPAGETGDLQFSNSISTSEL
SLVESSDTAMKETGTSLQTLTSAATMERLGGSNITQPSLSTRDALDKYHIVMQKMEDLVA
NNAGDGEIQVVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSSLHVSANLAILVAI
RDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRNKRAT
DFSISLLQSLVTEESSVISELHSLVDALAKLSSKSGSPESLQQLIDIIRNPVTNTSGLSD
SASGNENNDRQSKDEKVVCNTTANTEENASWEYVDADPAGFRNRVSTLFKNWYQICEVSG
ANETACSQYVSHLHQTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAGQSPQQAQSP
SFLIIDIYAKLVFSVLKYFPEQESSIKLFLLSEIMAVTVRSIQKDAEDKKTSLNPRPYFR
LFINWLLDLCSLDPGTDGTNFQVLTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKML
IVNGQKGWPYVQRLLVDLFQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHDFPEFLCDY
HFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSGVDAVLK
AKQMKNDVDEYLTLRQQNSTFLSELKQKLLLSSNEASSAGTRYNVPLINSLVLYTGMQAI
QQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLF
FESNQEIIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWQHAFIRCAPEIEK
LFESVARSCGSLKPVVDEGMVSGWADNNH
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atgctgatggttccgtcaaaggtcgccggccatacccggttcttgctcgagagttttaat
ggttccgatgtcgactcaatcgctcaagagatctgtcagttggttgatgttggtattgag
acaagcattccagctctcaagacgtgcatagattgcttcaccgtccggagaagccatcct
aatgcgttgcagcttgagaaacttgtatccttggtcttcaaacgcgttttgaacaactct
aataatctccaaaccctgatttctcacgcactccaagatgttgaggtcactgacgatttt
gtggatgatttgaccaatgcgttgggcttttcaatccctgagaaagttagcgttgctctg
gtcctggccgattctgaaagatccgatgcaaagtcaagtggacgaaacttattattggcc
gagatcgagcaactgtgtgccactcctggccagctcgagtcaactgagcaaattcagaat
gttgtcttgtttctccagcaatctgaggacctctccagccatttggattccttcctccgt
atcctctcttctgctcaacctcgagatgacttctcttttgctcttacgcctttcctttct
cctcaagatcaccaatcttatgttttcagtgacaacgagattgaggctatccttgatgaa
atcgataaggaacttgctgttggagatctcatgggtgaattaggttgtggtctcactgct
gatgcccagcaatgcaaagagatcttgtctactttcgcaccattaagagaggctgctatc
gccagaattcttgcaaatgtcgctcgtgcatgtcctgatcgtgaagataatcacaccacc
tttccaacattcgctctggcccttggatgctgccttccaactgaacttcccacgccaagg
tcgtggaatgctgacatcttaatcgaaacaatcatccagcttgctcctgccacaagctgg
aggaaagtaatcgagaatctcgaccatagtggatttgacatccctaatatggagtctttc
tcgtttttcatgcgcctatataaaactgcttgcaaggacccatttcctctggatgctgta
tgcgcttctgtctggaaaaatatggaaggtcaattatcctttcttaagcatgcaatagcc
gccccaccagaagtgttcacctttacgcattctccaaagaagctggtatatgttgataat
aacatgcacagccatgagcaacaattaggactttccaatcaagcttggctatctctcgat
ctcttagatgtgttatgccagctggccgagagaggtcatactgttttagttagttcgctg
ctccattatccactcacacattgtcctaaaaccctgcttcttggaatggcacacatcaaa
actgcctataatctcatccagcgagaggtgctttctgttgttttcccactgataataacg
aattcccaggatagtggttttatccttcatctctggcatcaaaatgctgagctcgttctg
tgggggattttaaatgcccaaaatcttaaagtagacagcatactcagaataattgaaatc
tgccatgagctcaagattctctctgtcgttttagaatcagttccagtctcattcagcatc
agattggcagcccttgcctcactgagaggatttttggacattgagaactggctgccaaac
tgtctatatgtgtataaggacacctttgctgtggagtgtctcaaatttgtcaagaatgtg
cattttaaccaatcggaggattttacttccaaacatttccatccgtctgatcctttatca
gatcttcatttggatgcaacagctttgcttttgaaagttttgaaagctcatgataatgtg
attacttcatctcaactggtagaagatatagaaaaagtaaatgcagcaatcttggattgt
aattcgaaactgcagaatggcgaagctaaagattcatcagcgtccaatgcatatggagaa
gatgttgaggcagaagcaaacgcttattttcatcaaatgttttctggtcagctgagtgtt
gatgctatggttcaaatgctttccttatacaaggactctttggttcagagggaaaaatca
atttttgaatgcatgattgctaatctatttgaggaatatcgttttttccccaagtatccc
gagaggcagctgaaaatagcttccattctctttggttctgttatcaagcaccagcttata
agctcaatcacattgggtatggcactgcgtctagtcttggattctttgcgtaaacctgca
gattcaaaaatgtttctctttggaagcaaagctctggaacagtttgtgaatcgtctggtt
gaattgcctcagtactgcaaccatattttacaaatatctcatctgcgtagcactcatccc
gagttagtcactgttattgaacaagcactttcaaggatatcatctggtaatttagagtca
gatgcctctgtttcgcaccctggtctttcacagtctttccctggaaatggcgagtttggt
tctggaattggtcaatctgcgttgcaacttccttctcctgtgctgcctcaacagacaaat
gaagtgcatattgatgaccgcagcagagtaccaagtgttccatctaacgaagcaaagccg
cttctgccgtcatcatctaacatttccgttgatgtttctgtcactcctaagaatcctggc
atttcgacttcttcatcaacctcagctggttttgttcgtccagctcgtggagctacttcg
acgaggtttggctctgctttgaacatagaaaccctggttgcagcagcagagagaagggaa
aacgcaatagaggctccaccgtcagatgttcaggacaaaatttcattcataatcaataat
atatctttagccaacattgaatctaaagggaaagattttgctgagattttgcctcagcag
tactatccttggtttgcacagtatatggttatgaaaagagcaagcatcgagcccaatttt
catgatttgtacttaaagttcctggacaaagttgattccaagctgttatttaaggagata
cttcaaaatacttacgaaaattgcaaggttctcttgggttcagagctcataaagtcaagc
tcggaagagcgatccctgcttaaaaatttaggcagttggcttggaaagttgaccattgga
aggaatcatgttttaagggcgcgagaaatagatccaaaatccttgattgtggaggcttat
gaaaaagggttgatgatagcagtaattccattcacttcaaaggttcttgaaccatgccaa
aacagtattgcgtatcagcctcccaatccttggacgatggctatacttgggttactcgct
gagatctattcaatgccaaacctaaaaatgaatctgaagtttgatatagaggttctattc
aagaaccttggtgttgatttgaaggaagtagcgccaacttcccttctaaaggatcggaag
agagaaatagatgggaatcctgattttagtaacaaagatcttggagtaacacatatatct
caaccaccgataatccaggagcctaaaacaatttctcctcttaagcaaatagacctacct
attgatgtagcaaatacagacattccctcaaagttattatcacagtatgtagccccacaa
cgtgtgtatgctaatactttgatggaagacgaaaaagtggcaactttaggcttgcctgat
cagctcccgtcacctcaaggactgttcccgtcaagtccatccccattgttttctactagc
cagccaccagcgcttcccaacattggaaatcatgtggttatcaatcagaaattaagcgga
tttggtacgcactttccatttccgagagtggtaccacttgccatggatagagctatcaaa
gatattgtgtctggtattgttcagagaagtgtttgcattgcttgccaaacaacaaaagag
cttgttctgaaggattatgccttggaaccagatgagacacgtatatatagtgcagctcac
ttgatggtagcgagtttagctgggagtttggctcatgtgacgtgcaaggaacccctgcgc
acttcaatttcaggtcatctgcggagttcgctccaggggaatattaaaaatgaagctctt
gaacaaattgtgcaacttgtgaccaatgacaaccttgatctgggttgtgctgccattgag
caggcggctacagagaaggcagtacaaactatcgacgcggacattgcccagcaattgttg
ttacggagaaagcccagagatggggctggatcctccctatcgcaaaattctgtcagtttt
ataccagagtccctccgccccaaaccgggacagctgtccctatctcaacagcgagtttat
gaggactttgttcaacttccttggcaaaagcagtcaacccacacttcacacggtttatct
gctgcttcaagctcatctggtgaggttgggcttggtagtaattatggtccagtatcagga
aaaagtgcttcggactctttgtctggtgctgaacacgcccggatggatatggtctcccgg
gcatcagatctttctgtggagggttttgaatctccagtttcacttttaagctcacaagtt
gatccagctggtgaaacaggcgatcttcagttctctaattccatttcgacttctgagttg
agcctggttgaatcctccgacactgctatgaaagaaactggaacatcattgcagacattg
acttcagctgctaccatggagcgtcttggtggaagtaatatcacccagccttctctgtcc
acgagagatgcactggataagtatcatattgttatgcagaagatggaggacttagtggct
aataatgcaggagatggtgaaattcaggttgtagtttctgaagttcctgaaatcatcctc
agatgtatcagcagagatgaagcagctctggctgtcgctcaaaaagctttcaaggctctt
tatgagaatgcatcaagtagtcttcacgtcagtgctaacctagcaattcttgtggctatt
cgtgatgtttgcaagcgtgttgttaaagagctaactagttgggtgatttattcagaggag
gagcggaagctcaacaaggatataactatcggtcttatccaacgcgagttgcttaaccta
gcggagtacaatgtccacatggcgaagcatcttgatggagggagaaacaagagagccact
gacttctctatttctctgctccaatccttggtcactgaggagtcgagtgtcatttcagag
ctacacagtcttgttgatgcactggcaaagctttcctcaaaatccggatctcctgagtca
ttgcaacaactaattgacatcatacgaaatccagttactaatacaagtggtctctctgat
agtgcatccggaaacgagaacaatgatagacaatcgaaggatgaaaaggttgtgtgcaat
acaactgctaacacagaagagaatgccagctgggaatacgtggacgcagatcctgcgggt
ttccggaatcgggtgtccacgctttttaaaaattggtatcaaatttgcgaagtttccggt
gcaaatgaaaccgcttgttcacaatatgtctcgcatttgcatcagactggactacttaag
ggagatgatacaacagagagttttttcagaattcttctggaactctctgttgctcattgt
atatcttctgaagaaatcagttctggagctgggcaatctcctcagcaagctcagagtcca
tcattccttattatcgatatttatgcaaagcttgttttttcagtattgaagtatttcccc
gaacaggagtctagcatcaagttatttcttctttcggagatcatggctgtaactgtgagg
tctattcagaaggacgccgaagataaaaagacgtcactcaatccaagaccatattttaga
ttgttcatcaactggctgctggacttatgttccctggatcctgggactgatggaacaaac
tttcaggttctaacagcttttgccaatgcattccacgcgttgcagcctcttaaggttccc
gctttcagctttgcatggctagagctggtcagccacagaagcttcatgcctaagatgctt
atagtaaatggccagaagggttggccatatgtgcaacgcctgctggttgacttgttccag
tttcttgagccatttttgagaaatgctgaactcggaggaccagttaatttcctatacaaa
gggacattgagagtgttgctggtgctgcttcatgacttcccggagttcctctgtgattat
cattttactttctgtgatgtgattccttcaagttgcatacaaatgcgaaatattattctc
agttcttttccacggaacatgaggcttccagatccctctacgccaaatttgaagattgat
ttactgcctgagatagtagaagctccatgtatcctttccggggttgatgctgtgcttaaa
gcgaagcaaatgaagaatgacgtggacgagtatctcactttgaggcaacagaattcaact
ttcctaagtgagttgaagcagaagctgcttctctcgtccaacgaggccagctcagctgga
acccgttacaatgtaccattgatcaactcgcttgtgctatatactggaatgcaggctatt
cagcagctacaagcgggtgagactcaggctcaaaatgtggtggccttgcacatgttcaag
tatttaagtatggaactagatacggaagggcgctacttgttcctcaacgcgatcgccaat
cagcttcgatatcccaacaaccacactcattatttctccttcatcatgctctatctcttc
ttcgagtctaaccaggagatcatcatacaggagcagataacaagagtgttgttggaaagg
ctaattgtgaaccggccgcatccttggggactcctaataacgttcatcgagctcatcaag
aatccaagatatggcttctggcaacatgccttcatcaggtgtgctcctgaaattgagaag
ctctttgaatcggtcgctagatcctgtggtagtctcaagccagtagttgacgagggaatg
gtctccggttgggccgacaacaatcactag
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integrated database retrieval system
