Brassica napus (rape): 106427344
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Entry
106427344 CDS
T04128
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106427344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106427344
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
106427344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_11
TPR_14
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_19
TPR_9
TPR_7
TPR_20
BTAD
TPR_NPHP3
Y2_Tnp
DUF4875
Motif
Other DBs
NCBI-GeneID:
106427344
NCBI-ProteinID:
XP_022565772
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All DBs
Position
C6:46319812..46325377
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AA seq
1158 aa
AA seq
DB search
MELEQLEKSVEANPDDPSLQFELGLYLWERGGDSERAAEHFVLSAKLNPDNASAFKYLGH
YYSRVTLDRNRAAKCYQRAVLLNVNDSESGEALCDLLDGQGKEILEVAVCRDASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKEC
IDLGAFGWAASLLEDARKAAKESTALASNMSSIWKLHGDIQLTFARCFPWSGGTENSEKT
FNDSILSWRSVCYSAALSAKSSYQRALHLAPWQANLYTDIAIACDLVSSLTDVSETSSSW
KLPEKMALGALLLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQIFR
ESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAEYQV
GLAWLALLQGSISSPQIFACIDQAVQRTPDYPESHNLHGLVCEARHNYHTAIASYRLALA
AMSVCPDSSVKSQAVKISINLVRSLSKAGRFKESAKECANLKSKCLLDAGALQIYAFSLW
KIGENDSALSVVRELAGRISTMEKTSIAFPISFICSLLYCISGLDSAITSIQKMPKEFFQ
SSKISFIVSAIHALDQSDRLQTIVASTRSYITSQEEIAAMHYLIALSKLLKTGEGEFLGF
EKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEVCAASRCSIINVSECGNKEGLKSA
LEVLGGGSVACNVIGNTAPRFSFPTCHCQSLNAPVVVAELQRFLHQEPWNSDVRYLLILN
LMQKAREQRFPRQLCSAIERLISVALSDEASGYQKLQLLLCASEMSLQKGDTAESIDHAR
KASSLSLPGSYLFLSHLQLCRVYASKGSTRDMQEEYKACLELKTDSNIGWICLKLMESQF
DLEADANLLEMMSPPSQNHSWKEWMAVYSLALGLVSSGKKDFSSAEEFLAQACSLGDSES
CLLLCHGAVCMELARQSNDSHFLSLAVTSLSKVQARSFTPLPIVYALLAQAHGSLGSKEK
WKKNLRLEWFCWPPEMRPAEVYFQMHILARESEERPETTSGIENCQTSEKWVLRAIHTNP
SCMRYWNVLDKLVQYPIS
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggaattggagcagctggagaagtccgtggaagccaacccagacgacccttctctgcaa
ttcgaacttggtttgtatctgtgggaacgcggcggagactcggagagagcggcggagcat
ttcgttctgtcggcgaagctaaaccctgacaatgcatctgcgttcaagtacttagggcat
tactactcgcgcgtgacgcttgatcgcaatcgagctgccaagtgttaccagagagcggtg
ctgctgaacgttaatgactctgagtctggagaggctctttgtgatttgttggatgggcaa
gggaaagagatcttggaagttgcggtttgccgtgacgcttctgagaagtctcccaaggct
ttctgggcgttttgcagattgggttacattcagcttcatcagaagaagtggtctgaagct
gttcagagccttcaacatgctattagaggctatcctacagtgtctgacctatgggaagct
cttggccttgcttaccagcgacttggaatgtttactgctgctatcaaggcgtatgggcgt
gccattgaattagatgagaccaagatttttgcattagtggagagcgcaaacatctttttg
atgcttggttcatatagaaagggtgtggagctctttgagcaagcgctgaagatttcacct
cagaatatttctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaatgc
atagatctgggcgcatttggatgggctgcttcgttattggaggatgctcgtaaagctgca
aaggaaagcactgcactggccagcaacatgtcttctatatggaaactgcatggagatatc
cagcttacgtttgcaagatgctttccatggtctggaggaactgaaaactcagaaaagaca
tttaatgattcaatactttcttggagaagcgtttgttactcagctgcactctcagccaaa
tcttcttaccagcgagctctacacttagccccttggcaagccaatctttatactgacata
gccatagcctgtgatctcgtttcaagcttaaccgatgtttctgaaacttcaagttcttgg
aagctacctgaaaagatggctctgggagcgttattacttgaatgcgacaactcggagttt
tgggttgctttgggttgtatgtctgataacagtgctttgaaactacatgctttgatcagg
gcgttgcatttggatgtatctttagccgttgcttgggcttttatgggccagatcttcagg
gaatcagatgaaatgaaactggcaaagcaggcttttgactgtgctagaagcatagatcct
acacttgctctaccttgggccggctcagctgatacttatgctagggagtccacatcagat
gaggcttttgagagttgtttacgagctgcgcagatatcacctcttgcggagtaccaggtt
ggtttggcatggcttgctttgctacaaggaagtatctcatctccgcagattttcgcttgc
attgaccaggcggtgcagcgcacccctgactaccctgaatcccataacctccacgggcta
gtctgcgaggcaagacataactatcacactgccattgcttcatacaggctagcactggct
gcaatgagtgtttgcccagacagttcagtgaaatctcaggctgtaaaaatatctatcaac
ttggtcaggtcactcagcaaggcaggacgtttcaaagaatctgccaaggaatgcgcaaat
ctgaagtcaaaatgtttgcttgatgctggagccttgcaaatctacgccttctctctgtgg
aagatcggtgagaacgattcggctctctcagtggttcgggagctcgctggtaggatctcc
acaatggagaaaacctcaatagctttcccaatcagcttcatctgcagtctgctttactgc
atatctggacttgattctgctatcaccagcatccagaaaatgcccaaagagttcttccag
agttcgaaaatcagctttatagtatccgccatccatgctcttgaccagagtgataggctt
cagacgattgttgcgagcactcgtagctacataacatcacaagaagagatagctgcgatg
cactatttgatagcactcagcaaactgctgaaaactggagaaggagagttccttggattt
gagaaggggattgcacacctcaggaaagctctgcatatgtatcctcatagtaatttgtta
aggaacctgcttggatatattttgttagctggtgaaggaaccaaagaggtctgtgctgct
agtagatgctctatcataaacgtctccgagtgtggaaacaaggaaggtctgaagtctgcg
ttggaagtccttggtggaggatcggttgcttgcaatgtaatcggcaacactgctccaagg
ttctctttcccaacatgccattgtcagagtctgaatgctcctgttgtcgttgcggaactg
caaagattcttgcatcaagagccttggaacagcgatgtgagatacttgctgattctgaat
ctcatgcagaaggctcgtgagcagaggttccctagacagctttgcagtgctattgagcgt
ttaatctccgtggcgctctctgatgaggcgtctggatatcaaaagctccagcttctgctt
tgtgcttccgagatgagtttgcagaagggagatacagcagagtctattgaccatgctcga
aaggcttcttccctttcccttccaggtagctacctgtttctatcacatttgcagctttgc
cgtgtctatgcatcaaagggaagcaccagagacatgcaagaggagtacaaagcgtgtttg
gagctcaagacagactcaaacattggttggatctgcctgaagctcatggaatctcagttt
gatctggaggctgacgctaacctcttggagatgatgagcccaccaagccagaatcattca
tggaaagagtggatggctgtttacagtctagctcttggcttagtttcttccgggaaaaaa
gatttctcctcagcggaggagtttcttgcacaagcttgctcgttgggtgattcagagagt
tgtctacttctctgccatggtgccgtctgcatggagctggctagacagtctaacgactcg
catttcctttcgctagctgtaacgagtctaagcaaagttcaagcgaggtcgtttactcct
ttgcctattgtctatgctttattggctcaagcacatgggagtcttggctctaaagagaag
tggaagaagaatctccgtcttgaatggttctgctggccaccagagatgagacctgcagag
gtttactttcagatgcatatacttgcaagagaatcagaagaaagacctgaaacaacttca
gggattgaaaactgtcaaacctctgagaaatgggtgcttagggcgattcacactaaccct
tcttgtatgagatactggaacgtcttggataagcttgttcagtatcccattagctaa
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integrated database retrieval system
