Brassica napus (rape): 106427406
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Entry
106427406 CDS
T04128
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106427406
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106427406
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106427406
NCBI-ProteinID:
XP_048622071
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Position
C8:complement(22087825..22089691)
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AA seq
406 aa
AA seq
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MQTTKLFISIVSFLLYAHLILSSPVPDPEAIVEEVHKSINASVAGRRKLGYLSCTTGNPI
DDCWRCDPHWETNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIH
DCKPGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSADPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKSWNWRSSGDLLLNG
AFFTPSGGATSSSYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgacgaagctctttatctccatagtctcctttcttctctatgctcatttgatc
ttatcttcaccagtaccagacccagaagctatcgtcgaagaagttcacaagagcattaat
gcgtcggttgctggaagaaggaagctaggttacctctcatgcaccactggtaaccctatc
gacgactgttggcgatgcgacccacactgggagaccaaccgtcagcgtctcgcagactgc
gccatagggttcggcaagaacgctatcggcggccgagacggtcgtatctacgtggtgaca
gactcaggaaacgacgacccagtgacccccaaacccggaacgttaagacacgccgtagtt
caagacgagccactatggatcattttccaacgagacatgaccattcagctcaaagaagag
ctgatcatgaactctttcaagaccatagacggtcgtggcgcgtcagtacacatcgctggt
gggccatgcattacgatccagtacgtgactaacatcatcatccatggtatccatatccat
gattgtaagccaggtggtaacgctatggtgcggagctcaccacggcattacgggtggaga
acgatatcggacggtgacggtgtctccatctttggaggaagtcatgtttgggttgaccat
tgttcactatctaactgcgaagacgggcttattgatgccataatgggctccacggctatt
actctgtctaacaattatatgacgcatcatgacaaggtcatgttgcttggtcatagtgac
acttacactcgtgacaagaacatgcaaatcaccattgcttttaaccattttggtgaaggc
cttgttcaaagaatgccaaggtgtagacatgggtacttccatgtggtgaacaacgactat
acgcattgggagatgtatgctattggtggaagtgctgaccctacaatcaatagtcaaggg
aacagatttttggccccggatattagatttagcaaagaagtgactaagcatgaggacgcc
ccagagagtgagtggaagagctggaactggagatcctctggtgatttattgctaaacggt
gcgttttttacgccttccggtggtgctacctcgtctagctatgccaaggcttcgagtctt
ggcgctagaccgtcttctctcgttggaccgttgacggttggttctggtgcattgaattgc
cgtaagggttcccgttgctga
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