Brassica napus (rape): 106434149
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Entry
106434149 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106434149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106434149
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106434149
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106434149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
106434149
NCBI-ProteinID:
XP_048597998
LinkDB
All DBs
Position
A9:44983994..44997232
Genome browser
AA seq
2429 aa
AA seq
DB search
MGLAVAVYVWGGKPKPKRKNRKVGNDQKNQRILLDLLFSPENPSKHFGYRIAMLMVPSKV
AGHTRFLLESFNGSDVDSIAQEICQLVDVGIETSIPALKTCIDCFTVRRSHPNALQLEKL
VSLVFKRVLNNSDNLQTLISNALQDVELTDEFVDDLTNALGFTIPEKISVALVLADSERS
DAKSSGRNLLLAEIEQLCASPGQIESTEQIQNVVLFLQHSEDLSSHLDSFLRILSSAQPR
DDFSFALTPFLSPQHHQSYVFSDSSDNDIEAILDDIDKELDLGDLMGELGCGLTADAQQC
KEILSTFAPLGEAAIARILGNVARSCPDREDNHTTFPTFALALGCCIPTELPTPRSWNAD
ILIETIIQLAPGTSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAVCASVW
KNMEGQLSFLKHAIAAPPEVFTFTHSPKKLVYVDNNMHSHEQQLGLSNQAWLSLDLLYVL
CQLAERGHTVLVSSLLHYPLTHCPKTLLLGMAHIKTAYNLIQREVLSVVFPLIITNSQDS
GFILHLWHQNAELVLWGILNAQNLKVDSILRIIEICHELKILAVVLESVPVSFSIRLAAL
ASLRGFLDIENWLPNCLYVYKDTFAVECLKFVKNVHFSQSEDFTSKHFHPSDPLSDLHLD
ATALLLKVLKAHDNVITSSQLVDDIEKVNAAILDCNSKLQNGEAKDSSASNAYGEDVEAE
ANAYFHQMFSGQLSVDAMVQMLSLYKDSLVQREKSIFDCMIANLFEEYRFFPKYPERQLK
IASILFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVELPQY
CNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGLSQSFPGNGEFGSGIGQ
SALQLPSPVLPQQTNEVHIDDRSRVPSVPSNEAKPLLPSSSNISVDVSVTPKNPGISTSS
STSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINNISLAN
IESKGKDFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEILQNTY
ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLRAREIDPKSLIVEAYEKGLM
IAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGC
DLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPPIIQEPKTISPLKQIDLPIDVAN
TDTPSKLLSQYVAPQRVYTNTLMEDEKVATLGLPDQLPSPQGLFPSSPSPLFSTSQPPAL
PNIGNHVVINQKLSGFGTHFPFPRVVPLAMDRAIKEIVAGIVQRSVCIACQTTKELVLKD
YALEPDETRIYSAAHLMVASLAGSLAHVTCKEPLRTSISGHLRSLLQDLNIKNEALEQIV
QLVTNDNLDLGCAAIEQAATEKAVQTIDADIAQQLLLRRKPRDGAGSSLSQNSVSFIPES
LRPKPGHLSLSQQRVYEDFVQLPWQKQSIHTSHGLSAASSSSGEVGLGSNYGPVSGKSAS
DSLSGAENARMDMVSRASDLSVEGFESPFALLSSQVDPAGETGGLQFSNSISTSELSLVE
SSDTAMKETGTSLQTLTSAATMERLGGSNIAQPSLSTRDALDKYHIVMQKMEDLVANNAG
DGEIQVVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSSLHVSANLAILVAIRDVC
KRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRNKSATDFSI
SLLQSLVTEESSVISELHTLVDALAKLSSKSGSPESLQQLIDIIRNPVTNTSGLSDSASG
NENNDRQSKDEKLCSQVVCNTTANTEENTSWEYVVADPAGFRNRVSTLFKNWYQICEVSG
ANDTACSQYVLHLHQTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAGQSPQQAQSP
SFLIIDIYAKLVFSVLKYFPEQESSIKLFLLSEIMAVTVRSIQKDAEDKKTSLNPRPYFR
LFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKML
TVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHDFPEFLCDY
HFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAVLK
AKQMKNDVDEYLTLRQQNSTFLSELKQKLLLSSNEASSAGTRYNVPLINSLVLYTGMQAI
QQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLF
FESNQEIIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWQHAFIRCAPEIEK
LFESVARSCGSLKPVVDEGMVSGWADNNH
NT seq
7290 nt
NT seq
+upstream
nt +downstream
nt
atgggcttagcagtggcggtatatgtgtggggaggaaaaccaaaacccaaacgcaaaaat
cgcaaagttgggaacgatcagaagaatcagcggatactgttggatcttctcttctccccc
gaaaaccctagcaagcattttggatatcgaatcgcgatgctgatggttccgtcaaaggtc
gccggccatacccggttcttgcttgagagttttaatggctccgatgtcgactcaatcgcc
caagagatctgtcagttggttgatgttggtattgagacaagcattccagctctcaagacg
tgcatagattgcttcaccgtccggagaagccatcctaatgcgttgcagctggagaaactt
gtatccttggtcttcaaacgtgttttgaacaactctgataatctccaaaccctgatttct
aacgcactccaagatgtggagctcactgacgagtttgtggatgatttgacgaatgcgttg
ggctttacaatccctgagaaaattagcgttgctctggtcctggccgattctgaaagatcc
gatgcaaagtcaagtggacgaaacttattattggccgagattgagcaactgtgtgcctct
cctggccagatcgagtcaactgagcaaattcagaatgttgtcttgtttctccagcattcc
gaggacctctccagccatttggattccttcctccgtattctctcttctgctcaacctcga
gatgacttctctttcgctcttacgcctttcctttctcctcaacatcaccaatcttatgtt
ttcagtgattcctctgacaacgacattgaggctatcctagatgatatcgacaaggaactt
gatcttggagatctcatgggtgaattaggttgtggtctcactgctgatgcccagcaatgc
aaagagatcttgtctactttcgcaccattaggagaggctgctatcgccagaattcttggt
aatgttgctcgttcatgtcctgatcgtgaagataatcacaccacctttccaacattcgcc
ctggcccttggatgctgcattccaactgaacttcccacgccaagatcgtggaatgctgac
atcttaattgaaactatcatccagcttgctcctggcacaagctggaggaaagtaatcgag
aatctcgaccatagtggatttgacatccctaatatggagtctttctcgtttttcatgcgc
ctatataaaactgcttgcaaggacccatttcctctggatgctgtatgcgcttctgtctgg
aaaaatatggaaggtcaattatcctttcttaagcatgccatagccgccccaccagaagtg
ttcacctttacgcattctccaaagaagctggtatatgttgataataatatgcacagccat
gagcaacaattaggactttccaatcaagcttggctatctctcgatctcttatatgtgtta
tgccagctggccgagagaggtcatactgttttagttagttcgctgctccattatccactc
acacattgtcctaaaaccttgcttcttggaatggcacacatcaaaactgcctataatctc
atccagcgagaggtgctttctgttgttttcccgctgataataacgaattcccaggatagt
ggttttatccttcatctctggcatcaaaatgctgagctcgttctgtgggggattttaaat
gcccaaaatcttaaagtagacagcatactcagaataattgaaatctgccatgagctcaag
attctcgctgttgttttagaatcagttccagtctcattcagcatcagattggcagccctt
gcctcactgagaggatttttggacattgagaactggctgccaaactgtctatatgtgtat
aaggacacctttgctgtggagtgtctcaaatttgtcaagaatgtgcattttagccaatcg
gaggattttacttccaaacatttccatccgtctgatcctttatcagatcttcatttggat
gcaacagctttgcttttgaaagttttgaaagctcatgataatgtgattacttcatctcaa
ctggtagatgatatagaaaaagtcaatgcagcaatcttggattgtaattcgaaactgcag
aatggcgaagctaaagattcatcagcttccaatgcatatggagaagatgttgaggcagaa
gcaaacgcttatttccatcaaatgttttctggtcagctgagtgttgatgctatggttcaa
atgctttccttatacaaggactctttggttcagagggaaaaatcaatttttgattgcatg
attgctaatctatttgaggaatatcgttttttccccaagtatcccgagaggcagctgaaa
atagcttccattctctttggttctgttatcaagcaccaacttataagctcaatcacattg
ggtatggcactgcgtctagtcttggattctttgcgtaaacctgcagattcaaaaatgttt
ctctttggaagcaaagctctggaacagtttgtgaatcgtctggttgaattgcctcagtac
tgcaaccatattttgcaaatatctcatctgcgtagcactcatcccgagttagtcactgtt
attgaacaagcactttcaaggatatcatctggtaatttagagtcagatgcctctgtttcg
caccctggtctttcacagtctttccctggaaacggcgagtttggttctggaattggtcaa
tctgcgttgcaacttccttctcctgtgctgcctcaacagactaatgaagtgcatattgat
gaccgcagcagagtaccaagtgttccatctaacgaagcaaagccgcttctgccgtcatca
tctaacatttccgttgatgtttctgtcactcctaagaatcctggcatttcgacttcttca
tcaacctcagctggttttgttcgtccagctcgtggagccacttcgacgaggtttggctct
gctttgaacatagaaaccctggttgcagcagcagagagaagggaaaacgcaatagaggct
ccaccgtcagatgttcaggacaaaatttcattcataatcaataatatatctttagccaac
attgaatctaaagggaaagattttgctgagattttacctcagcagtactatccttggttt
gcacagtatatggttatgaaaagagcaagcatcgagcccaattttcatgatttgtactta
aagttcttggacaaagttgattccaagctgttatttaaggagatacttcaaaatacttac
gaaaattgcaaggttctcttgggttcagagctcataaagtcaagctcggaagagcgatcc
ctgcttaaaaatttaggcagttggcttggaaagttgaccattggaaggaatcatgtttta
agggcgcgagaaatagatccaaaatccttgattgtggaggcatatgaaaaagggttgatg
atagcagtaattccattcacttcaaaggttcttgagccatgccaaaacagtattgcgtat
cagcctcccaatccttggacgatggctatacttgggttactcgctgagatctattcaatg
ccaaacctaaaaatgaatctgaagtttgatatagaggttctattcaagaaccttggttgt
gatttgaaggaagtagcgccaacttcccttctaaaggatcggaagagagaaatagatgga
aatcctgattttagtaacaaagatcttggagtaacacatatatctcaaccaccgataatc
caggagcctaaaacaatttctcctcttaagcaaatagacctacctattgatgtagcaaat
acagacactccctcaaagttattatcacagtatgtagccccacaacgtgtgtatactaat
actttgatggaagacgaaaaagtggcaactttaggcttgcctgatcagctcccgtcacct
caaggactgttcccgtcaagtccatccccgttgttttctactagccagccaccagcgctt
cccaacattggaaatcatgtggttatcaatcagaaattaagcggatttggtacgcacttt
ccatttccgagagtggtaccacttgccatggatagagctatcaaagagattgtggctggt
attgttcagagaagtgtttgcattgcttgccaaacaacaaaagagcttgtactgaaggat
tatgccttggaaccagatgagacacgtatatatagtgcagctcacttgatggtagcgagt
ttagctgggagtttggctcatgtgacgtgcaaggaacccctgcgcacttcaatttcaggt
catctgcggagtttgctccaggatctgaatattaaaaatgaagctcttgaacaaattgtg
caacttgtgaccaatgacaaccttgatctgggttgtgctgccattgagcaggcggctaca
gagaaggcagtacaaactatcgacgcggacattgcccagcagttgttgttacggagaaag
cccagagatggtgctggatcctccttatcgcaaaattctgtcagttttataccagagtcc
ctccgccccaaaccgggacatctgtccctgtctcaacagcgagtttatgaggactttgtt
caacttccttggcaaaagcagtcaatccacacttcacacggtttatctgctgcttcaagc
tcgtctggtgaggttgggcttggtagtaattatggtccagtatcaggaaaaagtgcttcg
gactctttgtctggtgctgaaaacgctcggatggatatggtctcccgggcatcagatctt
tctgtggagggttttgaatctccatttgcacttttaagctcacaagttgatccagctggt
gaaacaggcggtcttcagttctctaattccatttcgacttctgagttgagcctggttgaa
tcctccgacactgctatgaaagaaactggaacatcattgcagacattgacttcagctgct
accatggagcgtcttggtggaagtaatatcgctcagccttctctgtccacgagagatgca
ctggataagtatcatattgttatgcagaagatggaggacttagtggctaataatgccgga
gatggtgaaattcaggttgtagtttctgaagttcctgaaatcatcctcagatgtatcagc
agagatgaagcagctctggctgtcgctcaaaaagctttcaaggctctttatgagaatgca
tcaagtagtcttcacgtcagtgctaacctagcaattcttgtggctattcgtgatgtttgc
aagcgtgtggttaaagagctaactagttgggtgatttattcagaggaggagcggaagctc
aacaaggatataactatcgggcttatccaacgcgagttgcttaacctagcggagtacaat
gtccacatggcgaagcatcttgatggagggagaaacaagagcgccactgacttctctatt
tctctgctccaatccttggtcactgaggagtcgagtgtcatttcagagctacacactctt
gttgatgcactggcaaagctttcctcaaaatccggatctcctgagtcattgcaacaacta
attgacatcatacgaaatccagttactaatacaagtggtctctctgatagtgcatccgga
aacgagaacaatgatagacaatcgaaggatgaaaagctttgttctcaggttgtgtgcaat
acaactgctaacacagaagagaataccagctgggaatatgtggtagcagatcctgcgggt
ttccggaatcgggtgtccacgctttttaaaaattggtatcaaatttgcgaagtttccggt
gcaaatgataccgcttgttcacaatatgtcttgcatttgcatcagactggactacttaag
ggagatgatacaacagagagttttttcagaattcttctggaactctctgtcgctcattgt
atatcttctgaagaaatcagttctggagctgggcaatctcctcagcaagctcagagtcca
tcattccttattatcgatatttatgcaaagctggttttttcagtattgaagtatttccct
gaacaggagtctagcatcaagttatttcttctttcggagatcatggctgtaactgtgaga
tctattcagaaggacgcagaagataaaaagacgtcactcaatccaagaccatattttaga
ttgttcattaactggctgctggacttatgttccctggatcctgggactgatggagcaaac
tttcaggttctaacagcttttgccaatgcattccacgcgttgcagcctcttaaggttccc
gctttcagctttgcatggctagagctggtcagccacagaagcttcatgcctaagatgctt
acagtaaatggccagaagggttggccatatgtgcaacgcctgctggtagacttgctccag
tttcttgagccatttttgagaaatgctgaactcggaggaccagttaatttcctatacaaa
gggacattgagagtgttgctggtgctgcttcatgacttcccggagttcctctgtgattat
cattttactttctgtgatgtgattccttcaagttgcatacaaatgcgaaatattattctc
agttcttttccacggaacatgaggcttccagatccctctaccccaaatttgaagattgat
ttactgcctgagatagtagaagctccatgtatcctttccgaggttgatgctgtgcttaaa
gcgaagcaaatgaagaatgacgtggacgagtatctcactttgaggcaacagaattcaact
ttcctaagtgagttgaagcagaagctgcttctctcgtccaacgaggccagctcagctgga
acccgttacaatgtaccattgatcaactcgcttgtgctatatactggaatgcaggctatt
cagcagctacaagcgggtgagacgcaggctcaaaatgtggtggccttgcacatgttcaag
tatttaagtatggaactagatacagaagggcgctacttgttcctcaacgcgatcgccaat
cagcttcgatatcccaacaaccacactcattatttctccttcatcatgctctatctcttc
ttcgagtctaaccaggagatcattatacaggagcagataacaagagtgttgttggaaagg
ctaattgtgaaccggccgcatccttggggactcctaataacgttcatcgagctcatcaag
aatccaagatatggcttctggcaacatgccttcatcaggtgtgctcctgagattgaaaag
ctctttgaatcggtcgctagatcctgtggtagtctcaagccagtagttgacgagggaatg
gtctccggttgggccgacaacaatcactag
DBGET
integrated database retrieval system
