Brassica napus (rape): 106436935
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Entry
106436935 CDS
T04128
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106436935
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106436935
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106436935
NCBI-ProteinID:
XP_013733338
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Position
C7:complement(49828299..49830220)
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AA seq
406 aa
AA seq
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MQTKKLFISIVSFLLYAPLIFSSPVPDPEAIVEEVHKSINASVAARRKLGYLSCTTGNPI
DDCWRCDPHWESHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDKPLWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCVTIQYVTNIIIHGVHIH
DCKRGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHSDTYARDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNG
AFFTPSGGAQSSSYAKASSLGAKPSSLVGPLTVGSGALNCRKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagaagctctttatctctatagtctcctttcttctctatgctccattgatc
ttctcttcaccagttccagacccagaagccatcgtcgaagaagttcacaagagcattaac
gcatcggtcgcagcacggaggaagctaggctacctctcctgcacaaccggcaacccaatc
gacgactgctggcgatgtgacccgcactgggagtcccaccgtcaacgcctcgccgactgc
gccatcgggttcggcaaaaacgccataggcggccgcgacggtcgcatctacgtcgtcacc
gactcaggcaacgacgacccggtgacccccaagcccggaactttacgccacgccgtggtc
caggacaagcctctctggatcatcttccagcgagacatgaccatccgcctcaaagaggag
ctcatcatgaactctttcaagaccatcgacggccgcggcgcctccgtgcacatcgccggc
gggccttgcgtgacgatccagtacgtgacgaacatcatcatccacggggttcatatccac
gactgcaagcgaggcgggaacgctatggtgcggagctcgccgaggcactacgggtggaga
acggtttctgacggtgacggtgtgtctatcttcggagggagtcatgtttgggttgatcac
tgctcgttgtctaactgtgaagatgggcttattgatgcgataatgggctcgacggcgatt
actttgtctaataattacatgacgcatcatgacaaggtcatgttgcttgggcatagtgat
acttacgctcgtgacaagaacatgcagattactattgcttttaatcattttggtgaaggg
cttgttcaaagaatgccgaggtgtagacatgggtacttccatgtggtgaacaatgactat
acacattgggagatgtatgcgattggtggaagtgctaatcctactatcaatagtcaaggg
aacagatttgtggccccgaatattagattcagcaaagaagtgactaagcatgaggatgcg
ccagagagcgagtggaagaggtggaactggagatcatctggtgatttgttgttaaacggt
gcgttttttactccgtccggtggtgctcagtcgtctagctatgctaaggcatcgagtctt
ggggcgaaaccgtcttctcttgttggaccgttgacggttggttctggtgcattgaattgc
cgcaagggttctcgttgctga
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