Brassica napus (rape): 106439876
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Entry
106439876 CDS
T04128
Name
(RefSeq) probable pectate lyase 13 precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106439876
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106439876
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106439876
NCBI-ProteinID:
NP_001303093
UniProt:
Q6U6I9
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Position
C8:37369845..37373061
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AA seq
500 aa
AA seq
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MLLPHFSTAIFLLCLFFTLLQATNLTLPHQHHSPDSVALHVLSSINASLSRRQLSSSSCR
TGNPIDDCWRCTSSDWSSNRQRLADCSIGFGRGTLGGKNGKIYVVTDSSDNSPSNPTPGT
LRYAVIQEEPLWIVFSSNMLIRLKHELIINSYKTIDGRGSAVHITGNGCLTIQYVQHVII
HNVHIYDCKPSGGAVVAATPTKSGRRGRSDGDGISIFGAQKIWIDHCSMSHCTDGLIDAV
MGSTAITISNNYFAHHDEVMLLGHDDSYGPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIH
VVNNDFTSWKMYAIGGSGNPTINSQGNRYIAPSDPSAKEVTKRVDSKDDGEWSNWNWRTE
GDLMENGAFFVASGGGVSALYSKASSVEPKASALVDQLTRNAGVFGGPRDDQGQTGDSYS
GYGGGGGGGGSGGGGGGSSGSDGGTSAIGGTTRGSSTSSSDDSNFFGMIFGSNAPPRPRL
TLLFCLIMICVMSISSLLLL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttcctcacttctccaccgccattttcctcctctgcctcttcttcacactcctc
caagccactaatctcactctccctcaccagcatcattcccctgactccgtcgctctccac
gtcttaagttcaatcaatgcatccctctcacggagacaactctcctcctccagttgccgc
accggcaacccaatcgacgactgctggcgctgcacctcctcggactggtcctccaaccgc
caacgcctcgccgactgctccatcggcttcggccgcggcacactcggcggcaaaaacggc
aagatctacgtcgtcacagactcctccgacaacagcccatcaaacccaacccccggaaca
ctccgctacgccgtcatccaagaagagcccctctggatcgtcttctcctccaacatgctc
atccgcctcaaacacgaactcatcatcaacagctacaaaaccatcgacggccggggctcc
gccgtccacatcaccggcaacggctgcctgaccatccagtacgtgcaacacgtcatcatc
cacaacgtccacatctacgactgcaaaccctcggggggcgccgtggtcgccgcgacgccg
acgaaatccgggaggcggggcagatcggacggcgacgggatctccatcttcggagctcag
aagatctggatcgaccactgctccatgagccattgcaccgacgggcttatcgacgcggtg
atggggtccacggcgattacgatatcgaataactacttcgcgcatcatgatgaggtgatg
ctgttgggtcatgacgatagttatggcccggacacggggatgcaggtgacgattgcgttt
aaccatttcggacaggggcttgttcagaggatgccgaggtgtcggagagggtatatacac
gtggtgaataatgatttcacgtcgtggaagatgtatgcgattggtggaagtggtaatcct
acgattaacagtcaggggaatcgttacattgctccttctgatcctagcgccaaagaggtg
acgaagcgagtggattcgaaggacgatggagagtggtcgaattggaattggagaactgaa
ggagatctgatggagaacggagctttctttgtggcgtctggtgggggagtgagcgcattg
tactctaaagcttcgagtgtggagcctaaagcttcggctcttgtagaccagctcactcga
aatgctggcgtttttggtggtcccagggatgatcaaggtcagactggcgattcttattct
ggttatggaggtggtggtggtggtggtggtagtggtggcggcggaggtggaagcagcggc
agcgatggaggaactagtgctattggcggtactacgagaggaagtagcaccagcagcagc
gatgacagcaatttcttcgggatgatcttcggaagcaatgcaccgcctcgaccacgttta
acattattgttttgtttgataatgatttgtgtaatgtcaatatcaagtctattattgttg
tag
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