Brassica napus (rape): 106449446
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Entry
106449446 CDS
T04128
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106449446
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106449446
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106449446
NCBI-ProteinID:
XP_048618822
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Position
C7:complement(46478189..46480022)
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AA seq
390 aa
AA seq
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MASLVLLTFSLLFATFSSPLVDAFNYSNDSTFAAPAPNPIDAFNYSDGNYTLGAPALNPI
DACWRRDAKWSTNRQALARCAVGFGKAALGGSKGPIYVVTSPADDVGKPKPGTLRFGATQ
PNPLWITFARDMVIRLRTELEVKSHKTIDGRGVKVDIGNGPCISIKRASNVIIHGITVHD
CRLSKGFDGDGIRVFQSRNVWIDHCHLSRCQDGLIDVVTSSTAVTISNNRLINHQKAMLL
GHSDNHMADKNMKVTVAFNVFGPGLTERMPRVRRGYAHVANNMYNKWNLYAIGGSADPTI
FSESNHFVAPDRKEHKEVTKRMDKSPAAKNWKWSTNKDVFINGAFFTPSGGPGVPPPYAA
GERFPVAPGAQVPALTASAGPLRCAPGRAC
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctcgtgttattaacattttcactcctttttgcaactttctcttctcctctt
gtagatgcttttaattatagtaatgattccactttcgccgcgccagcaccaaaccctatt
gatgcttttaattatagtgatggtaattacaccctcggagcgccagcactaaatcctatt
gatgcttgctggcgaagagacgctaaatggtcgactaaccgtcaagccctggccagatgc
gcggtagggttcgggaaagccgcgttagggggcagcaaagggcctatctacgtggttaca
agcccagcagatgacgttggaaagcctaaacccggaaccttaaggtttggggcgacccaa
cctaacccactatggatcacattcgcacgtgacatggtcataaggttgagaaccgagctc
gaagtgaagagccacaagacgatagacgggagaggagtaaaagttgatattggtaacgga
ccatgcatttcgatcaaacgtgcgagcaatgtcattatacatgggataactgtccatgat
tgtagattgagcaaagggtttgacggtgacggaatccgcgtgtttcaatctagaaatgtt
tggatcgatcattgtcacttatctcggtgtcaagatggtttgatcgatgtggttacatct
tctacggctgtcactatttctaataatcgtttaataaatcaccagaaagcgatgttgctc
ggacattctgacaaccatatggctgataagaatatgaaagttacagttgcatttaatgta
tttggaccgggtctcactgagagaatgcctagggtgagaagagggtatgcgcatgtagca
aacaatatgtacaacaaatggaatctgtatgcgattggaggaagtgctgatcctactatc
tttagtgaatccaaccacttcgtcgctcctgacagaaaagaacacaaagaggtgacaaag
agaatggataaaagtcctgccgcaaaaaattggaaatggagtacgaataaggacgttttc
atcaacggagctttcttcacgccctctggtggaccgggcgttccgccgccgtacgcagct
ggagaacggtttccagtggccccgggggctcaagtccctgctcttactgcctcggccggc
cctctccgttgcgcacccggcagggcttgctaa
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