Brassica napus (rape): 106450745
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Entry
106450745 CDS
T04128
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106450745
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106450745
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106450745
NCBI-ProteinID:
XP_013747935
UniProt:
A0A816KSP3
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Position
C5:6119864..6122196
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AA seq
416 aa
AA seq
DB search
MIVYCLAHIYVVYIYICSHIVQIKRLHLQAKMASLLLTVSLLFAAFSYPLVEAAYYSNSY
YTTPKPLLNPIDSCWRRNPNWASNRRALADCAVGFGKAAIGGKYGSVYVVTNPSDNPENP
RPGTLRHAVIQSKPLWITFARDMVIVLQNELIMNSYKTIDGRGAKVEIAYGACITVQHLN
HIIIHGISIHDCKPGKSGRVRSSPTHIGSRKGSDGDAIAIFDSSHIWIDHCFFSRCQDGL
IDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDRIMRVTIAFNHFGPGLIERMPRVRL
GYAHIANNRYEKWQMYAIGGSANPTIFSEGNYFVASDDPSKKQVTKRIESGYDSKRWKWR
TSKDVFKNGAYFVQSGYGTVTPLYGRAEWFPVSHGSLVPSLTSSAGPLRCYSGRTC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgattgtatattgtctagctcatatatatgtcgtgtatatatatatttgctcacacata
gttcaaatcaagcgtctccatcttcaagcaaaaatggcttctcttttgttaacagtttca
cttctctttgcagctttctcttatcctcttgtagaggctgcttattatagtaatagttac
tacaccaccccaaaaccattactaaacccaatcgattcttgctggcgtagaaaccctaac
tgggcatctaaccgccgcgctctagccgattgcgcggttgggttcggtaaagccgcaata
gggggcaaatacgggtcagtctacgtggttacaaacccatcggacaaccctgaaaaccct
agacctggaaccctaaggcacgccgtgattcaatctaaaccgctatggatcacattcgca
cgtgacatggtcatagtgttgcaaaacgagctcatcatgaacagctacaagactatcgac
ggaagaggagccaaggtggaaatcgcatacggggcatgcataacggtccaacatttgaac
catatcattatacatgggataagtatccatgattgtaaaccgggtaagtcgggtcgggtg
cgcagcagtccgacccatattggaagtaggaaaggatcggacggtgacgcaatcgccata
tttgattcttcacatatttggatcgatcattgtttcttttctcggtgtcaagatggtttg
atcgatgtgcttcatgcttcgacggccgtcactatttctaataattacttcacacagcac
gataaagtgatgttgctcggccataatgacaataatgtggaagatcggattatgcgagtt
acaattgcattcaaccattttggaccgggtctcattgagagaatgcctagagtgaggcta
gggtatgcgcatatagctaacaatagatacgagaagtggcaaatgtatgcaatcggagga
agtgctaatccaactatcttcagcgaaggcaactacttcgttgcttctgatgaccctagc
aaaaaacaggtgacaaagagaatagaaagcggatatgattcgaaaaggtggaaatggaga
acatcaaaagacgttttcaagaacggagcttacttcgtgcagtctggatacggaaccgtc
acgccgttgtacggaagagcagagtggtttccggtgtcccacggctctctcgtcccttct
ctcacttcctccgccggccctctccgttgctactccggcaggacttgctga
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