Brassica napus (rape): 106452420
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Entry
106452420 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106452420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452420
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106452420
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106452420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
106452420
NCBI-ProteinID:
XP_013749984
LinkDB
All DBs
Position
C6:23723909..23737079
Genome browser
AA seq
2376 aa
AA seq
DB search
MSMTPSKVAGHTRFLLEHFNDSDVDSIAQEICQLVDYGVEASIPVLKTCVDCFTVRRSHP
NTLQLEKLLALVFKRVLKLSNLGTLLSHALQDADVTPEFVHDLATALGFSVSDKITFALA
LVDFETSHAKTSGRNLLLAEIEQLCANNGQIESTEQIQNVVLFLQTSEDLSGHLESFLQL
LSSSQPRDDLSFALTPLLSQHRSIDSAENDYDAILTEIDKEIAVGDLIGELGCGFTADAQ
QCKQLLSSFAPLREATISRILGHVARTSADLEDNHTTFSTFSLAVGCCIPTDLPTPTSWN
VDILIETIKQLQAPGTSWRKVIENLDHSGFDIANMESFSFFMRLYKTACKDPFPLDAVCA
SVWNNMEGQLSFLKHAIAAPPEVFTFTHSPRKLAYIDNIMHSHDQQLGVSNQAWLSLDLL
DVLCQLAERGHTVLVSSMLQYPLTHCPKTLLLGMTHVKTAYNLIQREVVSAILPVLITNS
QDSGFILKLWHQNAELVLWGILNAQNLKSDGILRIIEIFHELKIFSVVLESVPVSFSIRL
AVLASLRGFLDIENWLPNCLYVYKDLFAEECLKFVKYVHFSESEDFTSKHFHPSDPLSDL
HLDATTLLLKVLKAHDNVITSSQLVEEMEKVNSAILDCNSKLQNGEAKDSSVPSPYGEDV
EEEANAYFHQMFSGQLSVDAMVQMLSRYKESLVQREKSIFECMIANLFEEYRFFPKYPER
QLKIASVLFGSVIKHQLVSSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVEL
PQYCNHILQISHLRSTHPELVAVIEQALSRISSGNLESDASFSHPGPSQSLPGNGEFSVS
GIGQSPLQLPSPVQPQQKNEVHIDDRSKVPSVPSIETKPLLPSSSSSSADVSVIPKNPGI
STSSLTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINNI
SIANIESKGKEFAEILSQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEIL
QNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAYE
KGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK
NLGVDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVAHISQSQMISEPKTISPLKQIDLLL
DVANSSNTDAPSQLLSQYVAPQRAYTNTSVEDEKVVTLGLSDQLSSPQGPFQSTPPFSVS
QLSAALPNIGNLVVINQKLSGFSKHFPFQRVVPLAMDRAIKEIVSGVVQRSVCIACQTTK
ELVLKDYASEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGPNINNE
ALEQIVQLVTNDNLDLGCAAIEQAATEKAIQNIDADIAQQLSLRRKHRDGVGSSFFDPNM
RTQNSGSFIPESLSPKPGQLSLSQQRVYEDFVQLSWQKQSAQTSHGLSVASSSSGDVGLG
NGYGPVSGKNASDFESSAGNDRTDMAYRASDTSMEGFQSSPISLLSSQVDPAAGLQFSKS
LSTSELSLVESSEAAMKETGSSLQTLTSSATMERLIGNNTPQPSLSTRDALDKYHIVTQE
MENLVANNAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSNLHISANL
AILVAIRDVCKRVVKELTSWVIYSDEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGG
RNKSATDFSISLLQCLVTEKSSVISELHSLVDALAKLAAKSGSPVSLQQLIDIIRNPVTN
TSGLSDSATENEINDMQSKDEKVVCNTIANTEDNTSFEYVESGSTDFRKRVSTLFKNWYQ
VCEVSGANETACSEYVLHLYQTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAVQSP
QQAQSPSFLIIDIFAKLVFSILKYFPEQESSSKFFLLSEIMAVTVRSIQKDAEDKKASLS
PRPYFRLFINWLLDLCSLDPVTDGANFQVLTAFANAFHALQPLKIPAFSFAWLELVSHRS
FLPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHILYKGTLRVLLVLLHDFP
EFLCDYHFTFCDVIPSSCVQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSE
VDAALKANQMKNDVEEYLTSRQHDTTFLSELKLKLLVSSSEASSAGTRYNVPLINSLVLY
TGMQAIQQLQQAGETGAQNVVALHMFKYLSVELDTEGRYLFLNAIANQLRYPNNHTHYFS
FIMLYLFLESDQVVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKHGFIRC
APEIEKLFESVARSCGCLKPLDEGIVSAGWVSENSH
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgactccgtccaaggtcgccggccatacccggttcttactcgagcactttaat
gattccgatgtcgactcaatcgcccaagagatctgtcagttggttgattatggtgttgag
gcaagcatcccagtgctcaagacgtgcgtagattgcttcaccgtccggagaagccaccct
aatacgctgcagcttgagaagctgttagccttggtcttcaaacgtgtcctcaaattgtct
aatctcggaaccctgctttctcacgcactccaagatgctgacgtcactccagaattcgtt
catgatttggcaactgcattgggcttttcagtctctgataagattacctttgctctggcc
ctggtcgattttgaaacttctcatgctaagactagtggacgaaacttattattggcggag
attgagcaactctgtgctaacaatggccagattgagtcaactgagcaaattcagaacgtt
gttttgtttctccagacatccgaagacctctccgggcatttggagtccttcctacagctt
ctgtcttcctctcaacctagagatgacttgtcttttgcacttacgcctctcctttctcaa
cacaggagcattgattctgctgagaacgactatgatgctatcctcactgaaatcgataag
gaaattgctgttggagatctcattggagaattaggctgtggtttcactgctgatgcccaa
caatgcaaacagctcttgtctagtttcgcacccctaagagaggctactatctcaagaatt
cttggtcatgtggctcgtacctctgctgatcttgaagataatcacaccaccttttcaaca
ttcagtctggccgttggttgctgcattccaactgatctgcccacgccaacgtcgtggaat
gttgatatcttgattgaaacaatcaagcagcttcaggctcctggcacaagctggaggaaa
gtaatcgagaatctcgaccatagtggatttgacatcgctaatatggagtctttctcgttt
ttcatgcgactatataaaactgcttgcaaggacccatttcctcttgatgctgtatgtgct
tctgtctggaacaatatggaaggtcaattatcctttcttaagcatgcaatagcagctcca
ccagaagtatttacctttacgcattctccaaggaagctggcatatattgataatatcatg
cacagccatgatcaacaattaggagtttccaatcaagcatggctctctcttgatctctta
gatgtactctgccaactggccgagagaggtcatactgttttagttagttcgatgctccag
tatccactcacacattgtcctaaaacattgcttcttggaatgactcacgtcaaaaccgcc
tataatctcatccagcgagaggtggtatctgctattcttccagtgctaataacgaattcc
caggatagtggtttcattctcaagctctggcatcagaatgctgagctcgttctgtggggg
attttaaatgcccaaaatcttaaatcagacggcatactcagaataattgaaatcttccat
gagcttaagattttctctgttgttttagaatcagttccagtctcattcagcatcagattg
gcagtccttgcctcactgagaggctttttggacattgagaactggttgccaaactgtctg
tatgtgtataaggacctctttgctgaggagtgtctcaaatttgtcaagtatgtgcatttt
agcgaatcagaggattttacttccaagcattttcatccttcggatcctttatcagatctt
catttggatgcaacgactttgcttttgaaagttttgaaagctcatgataatgtgattact
tcatctcaactagtcgaagagatggaaaaggtcaattcagcaatcttggattgtaattcg
aaactgcagaatggggaggctaaagattcctcagttcccagtccatacggagaagatgtt
gaggaggaagccaacgcttatttccatcaaatgttttccggtcagttgagtgttgatgca
atggttcaaatgctatctcgatacaaggagtctttggttcaaagggaaaaatcaattttt
gaatgcatgattgctaatctgttcgaggagtatcgttttttccccaagtatcccgagagg
cagttgaaaatagcttccgtcctctttggttctgttattaagcaccagcttgttagttcc
atcacactggggatggcactgcgtctagtcttggattctttgcgtaagcctgcagattct
aaaatgtttctgtttggaagcaaagccctggaacagttcgtgaatcgtcttgttgaattg
cctcagtactgcaaccatattttgcaaatatctcatctgcgtagtactcatcccgagtta
gtcgctgttattgaacaagcactttcaaggatatcatctggtaatttggaatcagatgct
tcgttttcgcaccctggtccttcacagtctctccctggaaatggcgagtttagtgtttct
ggaattggccagtctccactccaacttccttctcctgtacagcctcaacagaaaaatgaa
gtgcatattgatgaccgcagcaaagtgccaagtgtgccatctatcgaaacaaagccactt
ctgccctcgtcatctagcagttctgctgatgtttctgtcattcctaagaatcctggcatt
tcgacttcttcattgacctcagctggttttgttcgtccagctcgtggagccacatcaacg
aggtttggctctgctttgaacatagaaaccctggttgcagcagcagagagaagggaaaac
gcaatagaggctccaccttcagatgtccaggacaaaatatctttcataatcaataatatc
tctatagctaacattgaatctaaagggaaagagttcgctgagattttatctcaacaatac
tatccttggttcgcacagtatatggttatgaaaagagcgagcatcgagcccaattttcac
gatttgtacttgaagttcttggacaaagttgattccaagctgttgtttaaggagatactc
caaaatacatacgaaaattgcaaggttctgttgggttcagagctcataaagtcaagttct
gaagagcgatctctgcttaaaaatttaggcagctggcttggaaagttaacgattggaagg
aattatgttttaagggcgcgagaaattgatccaaaatccttgattgtggaggcgtatgaa
aaagggttgatgatagcagtcattccattcacttcgaaggttctggagccatgccaaaac
agtattgcgtatcagcctcccaatccttggacaatggctatactcgggttgcttgctgag
atttattcgatgccaaacctaaaaatgaatctgaagtttgacatagaggttctattcaag
aaccttggtgttgatttgaaagaagtagcgccaacttcccttctaaaggatcggaagaga
gaaatagatgggaatcctgattttagtaacaaagatcttggagtagcacatatatctcag
tcccagatgatctcggagcctaaaacaatttctcctcttaagcaaatagatctacttctt
gatgttgcaaattcatctaatacagacgctccctcgcagttattgtcacagtatgtagcc
cctcaacgtgcttatactaatacttcggtggaagacgaaaaagttgtaactctaggcttg
tctgatcagctctcgtccccacaaggaccgttccagtcgactcctcccttttctgttagc
cagctgtcagcagcacttccgaacattggaaatcttgttgttatcaatcagaaattaagc
ggatttagtaagcactttccatttcagagagtggtaccacttgccatggacagagccatc
aaggagattgtgtctggtgttgttcagcgaagtgtttgtattgcttgccagacaacaaaa
gagcttgtgctcaaggattatgcctcggaaccagatgagacacgtatatataatgcagct
cacttgatggttgctagtttagctgggagtttggctcatgtgacgtgcaaggaacccctg
cgcacttcaatttcgggtcatctacgtaattcgctacagggtccgaatattaataatgaa
gctcttgaacaaattgttcaacttgtcaccaatgacaaccttgatttgggttgtgctgcc
attgagcaggcggctacagagaaggcaatacaaaatattgatgcggacattgcccagcaa
ttatcgttgcggagaaagcatagagatggtgttgggtcctccttttttgatccaaacatg
cgaacgcaaaattctggcagttttatacctgagtccctcagcccaaaaccgggacaattg
tccctttctcaacagcgcgtttatgaggactttgttcaactttcttggcaaaagcagtca
gcccaaacttcacacggtttatccgttgcttcaagctcatccggcgatgttgggcttggt
aatggttatggtccagtatcaggaaaaaatgcttcggacttcgagtctagtgctggaaat
gatcggacggatatggcctaccgggcatcagatacttctatggagggttttcaatcctct
ccaatttcacttttaagctcacaagttgatccagcagccggtcttcaattctctaaatcc
ctttcgacctctgaattgagcctggttgagtcctccgaggccgctatgaaagaaactgga
tcatcattgcaaacgttgacttcatctgctaccatggagcgtcttattggaaataatact
ccacagccttctctgtccacgagagatgcattggacaagtatcatattgttactcaggag
atggagaacttagtggctaataatgcaggagatgatgaaattcaggctgtagtttctgag
gttcctgaaatcatcctcagatgtataagcagagatgaagcagcgttagctgttgctcaa
aaagctttcaaggctctttatgagaatgcatcaagtaaccttcacatcagtgctaaccta
gcaattcttgtggctattcgtgatgtttgcaagcgtgttgttaaagagctcactagttgg
gtgatttattcagacgaggaacggaagctcaacaaagatattactattggtcttatccaa
cgcgagttgcttaacctagcggagtacaatgtccacatggcgaagcatcttgatggaggg
agaaacaagagcgccactgacttttctatttctctactccaatgcctggtcactgagaag
tcgagtgtcatttcagagctacatagccttgttgatgcactggccaagcttgcggcaaaa
tctggatctcctgtctcgttgcaacaactcattgacatcatacgaaatccggttactaac
acaagtggtctcagtgatagtgcaactgaaaacgagatcaatgatatgcaatcaaaggat
gaaaaggttgtatgcaataccatcgctaacacagaagataataccagctttgaatatgtg
gaatcaggttctacggatttccggaaacgggtgtccacgctttttaaaaactggtatcaa
gtctgcgaagtttcgggtgcaaatgaaaccgcttgttcagaatatgtcttgcatttgtat
cagactggactacttaagggagacgatacaacagagagttttttccgaattcttctggaa
ctttctgttgctcattgtatatcttctgaagaaattagctctggtgctgtgcaatctcct
cagcaagctcagagtccatcattccttatcatcgatatttttgcaaagcttgttttttcg
atcttgaagtatttccctgaacaagagtctagcagcaagttttttcttctttcggagatc
atggctgtcactgtgagatctattcaaaaggacgcagaagataaaaaggcatcactcagt
ccaagaccatattttagattgttcatcaactggctgctggacttatgttccctggatcct
gtgactgatggtgcaaactttcaggttctaacagcttttgctaatgcattccacgcattg
cagcctctgaagattcccgctttcagctttgcatggttagagctggtcagccacagaagt
ttcttgcccaagctacttacagtaaatggacagaaaggttggccatatgttcaacgcctg
ctggtagacttactccagtttcttgagccatttttgagaaatgcggaactcggaggaccg
gttcatatcctatataaagggacgctgagagtgttgctggtgctgcttcatgacttccca
gagttcctctgcgattatcattttactttctgtgatgtgattccttcaagttgcgtacaa
atgcgaaatattatactaagttcttttccacggaacatgaggcttccagacccatctacc
ccaaatttaaagattgatttgctgcctgagatagtagaagctccgtgtattctatctgag
gttgatgctgcgctaaaagcaaatcaaatgaagaatgacgtggaagagtatctcacttcg
aggcaacatgatacaactttcctaagtgagttgaagctgaagctacttgtctcgtccagc
gaggctagttcagctggaactcgttacaatgtaccattgatcaactcgctggtgttatat
actggaatgcaggctattcagcagctacaacaggcgggtgagacaggggctcaaaatgtg
gtggccttgcatatgttcaagtatttaagtgtggagcttgacacagaagggcggtatctg
ttcctaaatgcaatcgccaatcagcttcgatatccaaacaaccacactcattacttctcc
ttcatcatgctctatctcttcttggagtctgaccaggtggtcatacaggagcagataaca
agagtgttgctggaaaggctaattgtgaacaggccgcatccatggggactcctgataacg
ttcatagagctcataaagaatccaaggtatggcttctggaaacatggcttcatcaggtgt
gctcctgagattgagaaactctttgaatcggtggccagatcatgtggttgtctcaagccc
cttgacgagggaattgtctccgccgggtgggtctcggaaaactctcattag
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integrated database retrieval system
