Brassica napus (rape): 111204226
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Entry
111204226 CDS
T04128
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111204226
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111204226
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111204226
NCBI-ProteinID:
XP_022554198
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Position
C3:complement(786362..791832)
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AA seq
519 aa
AA seq
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MVAHKGVHNHQKPTCICIIWFCLLVSLPHHGRASFPLSSSSSFNLSLPHQHPFPEHVVLN
VQRKLNDSLSRRNLLTYQQDDATTASSAPIPSCLTGNPIDDCWRCDPNWSQNRQRLADCS
IGFGQGTLGGKGGRFYLVTDSSDDDAANPLPGTLRHAVIQPEPLWIIFSGDMGITLRHEL
IVGSFKTIDGRGTNVQITGHGCLTIQQVSHVIVHNVHIHHCKPSGNTLVASSPTHVGFRG
VSDGDGISVSASHHIWVDHCSLGYCSDGLIDVILASTAVTVSNNYFHHHDEVMLLGHDDR
YTADSGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTINSQGN
RYTAPIDPNAKEVTKRVDSNEKHWGKWNWRTEGDVMVNGAFFVPSGDGVSPAFARATSLQ
AKTADVIDQLTVNAGVFGDPSGRNGQGGAFPGITGGGGTVTRGYSKGGPGGGSSDSDDGI
FTMIFGSNSSAAAVALRPRQVWSIVFTIILLWYFPHHRR
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggtagctcataagggggtccataatcatcagaaaccaacctgcatttgcataatctgg
ttctgcctcttggtctctctccctcaccatggaagagcatccttcccattatcatcatca
tcttccttcaatctttctctcccacaccaacacccatttcctgaacatgttgttctcaat
gttcaaagaaaactcaacgactctctctcccgaagaaacctcctcacttaccaacaagac
gacgccaccacggcctcgtcggcgccaataccttcttgcctcaccggcaacccaatcgac
gattgctggcgctgcgacccaaactggtcgcaaaaccgccagcgcctcgccgactgctca
atcggcttcggacaaggcacactcggcggcaaaggcggccgcttttacctcgtcaccgac
tcctccgacgacgacgcggcgaacccacttcccggaaccctccgccacgccgttatacag
ccggagcctctctggatcatcttctccggcgacatggggatcacgctccggcacgagctc
atcgtcgggagcttcaagacgatcgacgggagaggcacgaacgtccagatcacgggccac
gggtgcctgacgatccagcaggtgagccacgtcatcgtccacaacgtccacattcaccac
tgcaaaccctccgggaacactctcgtcgcttcttcgccgacgcacgtcggattcagagga
gtctccgacggagacgggatctcggtctctgcttcgcaccacatttgggtcgatcactgc
tctctcggttactgttccgacggactcatcgacgtcatcttagcatcaaccgccgtcaca
gtctccaacaactactttcatcaccacgacgaggttatgctcttaggtcacgacgacagg
tatacggcggactcggggatgcaagttactattgcgttcaaccattttggggaggggctg
gtgcagaggatgccacggtgtagacatggttatattcacgtggtgaacaacgattttact
gcatgggagatgtatgcaataggtggaagtgctaaccctacgatcaatagtcagggtaac
cgttacaccgcacctattgatcccaatgctaaagaggtgacgaagcgtgtggactcaaac
gagaaacactgggggaaatggaactggaggacggagggagatgttatggttaacggagcg
tttttcgtgccgtcaggtgacggagtgagtccggcgttcgcccgagccactagtcttcag
gcaaagaccgctgatgtaattgaccagctcacggtcaatgccggcgttttcggcgatccc
agtgggagaaacgggcaaggaggagctttccccggaatcacgggcggtggtgggaccgtc
acacgcggttacagtaaaggtggacccggaggcggtagcagcgacagcgatgatggcatt
ttcacaatgatattcggtagcaattccagtgcggcggcggtggctttgaggccgagacaa
gtctggtcaattgtattcactatcatcttactttggtattttccacaccataggagatga
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