Brassica napus (rape): 111207780
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Entry
111207780 CDS
T04128
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111207780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
111207780
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111207780
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111207780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
111207780
NCBI-ProteinID:
XP_048614447
LinkDB
All DBs
Position
C5:58378..71545
Genome browser
AA seq
2394 aa
AA seq
DB search
MVMNPSKVAGHARFLLESFSDSEVDSIAQEICQLVEYGVETSIPVLKTCLDCFAARRSHP
NSSQLEKLISLVFKRVLKHSNLISHALRDVEVTDEFVADLTNALDFSISDKISFALSLAE
FDSSDDANAAGRNLLLAMIEQLCANSAQIESTEQVQNILLFLQNSEDLSTHLNSFLHILS
STLPKDDFSFALTPILSQQLHEADVLRCIDFDTEFDAILAEIDKEISVGDLMGELGCGVT
ADAQLCKDILSSFAPLTEATISRILANVARTCADLEDNHTTFSTFSLVLGCCIPTELSTP
MSWSVDILTETITQLQAPGTSWRKVIENLDHSGFEIPNKESFSFFMRLYKTACKDPFPLD
AVCGSVWKNVEGQISFLKYAIASPPEVFTFMHSPRKLVYIDDNMHSHEHQLGLSNEAWLS
LDLLDVLCQLAERGHTVLVSSLLQYPLAQCPKTLLTGMTHIKTAYNLIQREVVSAILPVI
ITNSQDSGFILNLWHQNTELVLWGILNAQNLKADRILNLIDICHELKVLSVVLESVPISF
SIRLAVLASLRGYLDIENWLPNFLCVYKDLFAEECLKFVKNVHFSESEDFTSEHFHPSDP
LSDVHLDATTSLLKVLKAHDNVITSSQLVDEIEKVNAAILDCNSKLQNGEAKVSSASNAY
GDDIEAEANAYFHQMFSGQLSVDAMVQMLSRYKDSSVQREKSIFDCMIANLFEEYRFFPK
YPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNR
LVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESEAVSNPGPSQSFPGNGEF
SGSGIGQSALQLPLPVQSQQKNEVHINGNSRVPSVPFIEAKTLLPSSSTTSADVSVIPKN
PGISTSSLTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIETPPSDVQDKISFII
NNISTANIESKGKEFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFK
EILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVE
AYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEV
LFKNLGVDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPQMIQEPKTISPLKQID
LPLDVADSPNTDASSKLFSQYVAPQRVYTNTLMEDEKVSTLGLSDQLPSPQGLFPSTPSP
LFSISQLSAALPNIGNHVVINQKLSGFAMHFPFHRVVPLAMDRALKEIVSGIVQRSVCIA
CQTTKELVLKDYTLEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISCHLRNSLQGM
NIKNEALEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDADIDQQLLLRKKHRDGAGSSL
FDPNMLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQTTQTSHGLSAASSSSG
DVGLSSSYGPASGKSASDFLSSAGNARMDNVSRPLDISVEGFESPPVSLLSSQVDPAVDT
AGLQFSKSLSTSELSLVESSDTAVKETGASLQTLTSAATMERLGGNNIIQPSLSTRDALE
KYHIVTQKMEDLVANIAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYDNASS
NLHVSANLAILVAVRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVH
MAKYLDGGRNKSATDFSISLLQSLVTEESSVISELHSLVDALAKLSSKSGSPESLQQLID
IIRNPVTNTSDHSDSAIGIENNDKQSKDKKVVYNTTANIEENTNLEFVESESAGFRIRVS
TLFESWYQICEVSGANETACSQYVLHLHETGLLKGDNTTESFFRILLELSVAHCISSEEI
SSGAVQSPQQAQSPSFLIIDIYAKLVFSILKYLPEQESCSKLFLLSEIMAVTVRSIQKDA
EDKKTSLNPRPYFRLFINWLLDLCSLDPGTDGANFQVLSAFASAFHALQPLKFPAFSFAW
LELVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPLVSLVYLYQLCK
VNFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPST
PNLKIDLLPEIVEAPCILSEVDAALKAKQMKNDVDEYLASRQQNSAYLSELKQKLLLSSS
EASSAETRYSVPLINSLVLYTGIQAIQQLQAGETQAQNVVALHMFKYLSMELDTEGRYLF
LNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIVQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPRYGFWKQAFIRCAPEIEKLFESVARSCGGLKPPDEGMVSGWVSDNSH
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgaacccgtccaaggtcgccggccatgcccggttcttactcgagagctttagc
gattcggaagttgattcaatcgcccaagagatatgtcagctggttgagtatggtgttgag
acaagcattccagttctcaagacatgtttagattgcttcgccgcccgtagaagccatcct
aattcctcgcagcttgagaaactaatatccttggtctttaaacgtgtcctgaaacactct
aatctcatttctcacgcccttcgagatgtcgaggtcactgatgagttcgtggctgatttg
actaatgctctcgacttttcaatctctgacaaaattagctttgctctgtctctagccgag
tttgacagctccgatgatgcaaacgcagctggtcgaaacttattattggccatgattgag
caactgtgtgccaattctgcccagattgagtcaaccgagcaagttcagaatattcttttg
tttctccagaattctgaggacctctccacccatcttaattccttcttacatattttgtct
tctactctacccaaagatgacttttcttttgctcttactcctatcctttctcaacagctt
cacgaagctgatgttttaaggtgcatcgattttgacactgagtttgatgctatcttagct
gaaatcgacaaggaaatttctgttggagatcttatgggagaattaggttgtggtgttact
gctgatgcacaactatgcaaagatatcttgtctagtttcgcaccattaacagaggctact
atctcaaggattcttgctaacgttgctcgtacttgtgctgatctagaagataaccacacc
accttttcaacatttagtctggtccttggttgctgcattcccactgaactttccactcca
atgtcgtggagtgttgacatcttaactgagacaatcacgcaacttcaggctcctggcaca
agttggaggaaagtaatcgagaatcttgaccatagtggatttgagatccccaataaggaa
tctttctcgtttttcatgcggctatataaaactgcttgcaaggacccgtttcctcttgat
gctgtatgcggttctgtctggaaaaatgtggaaggtcaaatatcgtttcttaaatatgca
atagcatccccaccagaagtattcacctttatgcattctcccaggaagctggtatatatt
gacgataacatgcacagccatgagcatcaattaggactttccaatgaagcatggctatct
ctcgatctcttagatgtcttatgccaactagctgagagaggtcatactgttttagttagt
tcgctgctccagtatccactcgcacagtgtcccaaaaccttgcttactggaatgacacac
atcaaaactgcctataatctcattcagcgagaggttgtttctgctattcttccagtgata
attacgaactcacaggatagtggttttatccttaatctttggcatcagaatactgagctt
gttctgtgggggattttaaatgcccaaaatcttaaagcagaccgcatactcaatttaatt
gatatctgccatgaactgaaggttctttctgttgttttagaatcggttccaatctcattc
agcatcagattggcagtccttgcctcactgagaggctatttggacatcgagaactggttg
ccaaactttctatgtgtgtataaagacctctttgcggaggaatgtctcaagtttgtcaaa
aatgtgcattttagcgaatcagaggattttacttccgaacatttccatccttctgatccg
ttatcagatgttcatttggatgcaacgacttcgcttttgaaagttttgaaagctcatgat
aatgtgattacttcatctcaactggtcgatgagatagaaaaggtcaatgcagcaatcttg
gattgtaattctaaactgcagaatggtgaggctaaagtttcatcagcttcgaatgcatat
ggagacgatattgaggcagaagcgaacgcttatttccatcaaatgttttcgggtcagttg
agtgttgatgcaatggttcaaatgctttcgcgatacaaggactcctcggttcaaagggaa
aaatcaatttttgattgcatgattgctaatctgttcgaggaatatcgtttttttcccaag
tatcccgagaggcagctaaaaatagcctccatcctttttggttctgttatcaagcaccag
cttataagttctctcacacttgggatggcactgcgtttagtcttggattctttgcgtaaa
cctgcagattcaaaaatgtttctgtttggaagcaaagctctggaacagttcgtgaatcgt
ctggttgaattacctcagtactgtaaccatattttgcaaatatctcatctgcgtagcact
caccccgagttagtcactgttattgaacaagcactttcaaggatatcatctggtaattta
gaatcagaggcagtttcgaaccctggtccttcacagtctttcccaggaaatggcgagttt
agtggttctggaattggccagtctgctctccaacttcctttacctgtacagtctcaacag
aaaaatgaagtgcacattaatggcaacagcagagtgccaagtgtgccatttatcgaagca
aagacacttctgccctcttcatctactacttccgctgatgtttctgtcattcctaagaat
cctggtatttcgacttcttcattaacttcagctggttttgttcgtcccgctcgtggagcc
acttcgacgaggtttgggtctgctttgaacatagagaccctggttgcagcagcagagaga
agggaaaacgcaatagagactccaccttcagatgttcaggacaaaatttctttcataatc
aataatatctctacagccaatattgaatccaaggggaaagagttcgctgagattttgcct
caacagtactatccctggttcgctcagtatatggttatgaaaagagcgagcatcgaaccc
aattttcatgatttgtacttgaagttcttggacaaagttgattccaagctgttgtttaag
gagatacttcaaaatacttacgaaaattgcaaggttctcttgggttcagagctcataaag
tcaagttcggaagagcgatctctgctcaaaaatttaggcagttggcttggaaagttgacc
attggaaggaattatgttttgagggcgcgagaaattgatccaaaatccttaattgtggag
gcatatgaaaaagggttgatgattgcagtcattccatttacttcaaaggttctggagcca
tgccaaaacagtattgcgtatcagcctcccaatccttggacaatggctatactcgggttg
ctcgctgagatttattcaatgccgaaccttaaaatgaatctgaagtttgacatagaggtt
ttattcaagaaccttggtgttgatttgaaggaagtagcgccgacttcccttctaaaggac
cggaagagagaaatagatgggaatcctgattttagcaacaaagatcttggagtgacacat
atatctcaaccacagatgatccaagagccgaaaacaatttctcctcttaagcaaatcgac
ctacctctggatgttgcagattcacctaatacagacgcttcctcgaagttattctcacag
tatgtagcccctcaacgtgtatatactaatactttgatggaagacgaaaaagtttccact
ttaggcttgtctgatcagcttccatcacctcaaggactgttcccgtcaactccatcccca
ttgttttctattagccagctgtcagcagcacttcccaatattggaaatcatgttgttatt
aatcagaaattaagcggatttgctatgcacttcccatttcatagagtggtaccacttgcc
atggacagagctctcaaggagattgtgtctggtattgttcagcgaagtgtatgtattgct
tgccaaacaacaaaagaacttgtgctgaaggactataccttggaaccagatgagacacgt
atatataatgcagctcacttgatggttgctagtctagctgggagtttggcccatgtgacg
tgcaaggaacccctgcgcacttcaatatcatgtcatctacggaattcgctccaggggatg
aatattaaaaatgaagctcttgaacaaattgtgcaacttgtcaccaatgacaaccttgat
ttgggttgtgctgccattgaacaggcggctacagagaaggcaatacaaactattgatgcg
gacattgaccagcaattgttgttacggaaaaagcatagagatggtgccggatcctccctt
tttgatccgaacatgctatcgcagaattctgttagttttataccagagtccctccgtcca
aaaccgggacatctatccctgtctcaacagcgagtttatgaggactttgttcagcttcct
tggcaaaagcagacaactcaaacgtcacacggtttatctgccgcttcaagctcatctggc
gatgttgggcttagtagtagttatggtccagcatcaggtaaaagtgcttcggactttttg
tctagtgctggaaacgctcggatggataacgtctcccggccattggatatctctgtggag
ggttttgaatctcctccagtttcacttttaagctcacaagttgatccagctgttgacaca
gccggtcttcagttctctaaatccctttcgacctctgaattgagcctggttgaatcctct
gacaccgctgtgaaagaaactggagcatcattgcagactttgacttcagctgctaccatg
gagcgtcttggtggaaataatattatacagccttctctgtccacgagagatgcactagaa
aagtatcatattgttacacagaagatggaggacttagtggctaatattgcaggagatgat
gaaattcaggctgtagtttctgaagttcctgaaatcatcctcagatgtataagcagagac
gaagctgccttggctgtcgcccaaaaagctttcaaggctctttatgacaatgcatcaagt
aaccttcacgtcagtgctaacctagcaattcttgtggctgttcgagatgtttgcaagcgt
gttgttaaagagctcactagttgggtgatttattcagaggaggagcggaagcttaacaaa
gacattactatcggtcttatccaacgcgagttacttaacctagcggagtacaatgtccac
atggcgaagtatcttgatggagggagaaacaaaagcgccactgacttttctatttctcta
ctccaatccttggtcactgaggagtcaagtgtcatttcagagctacacagtcttgttgat
gcactggcaaagctttcctcaaaatctggatctcccgagtcattgcaacaactaattgac
atcatacgaaatccagttactaacacaagtgatcactctgatagcgcaatcggaattgag
aacaatgataagcaatcaaaggataaaaaggttgtgtacaataccaccgctaacatagaa
gagaacaccaacttggaatttgtggaatcagagtctgcgggtttccggattcgggtgtcc
acactttttgaaagctggtatcagatctgcgaagtttctggtgcaaatgaaaccgcttgt
tcacaatacgtgttgcatttacatgaaactggactacttaagggagataatacaacagag
agttttttccgaattcttctggaactttctgttgctcattgtatatcttctgaagaaatt
agttctggtgctgtgcaatctcctcagcaagctcagagtccatcattccttatcattgat
atttatgccaaacttgttttctcgatcttgaagtatctcccggaacaggagtcgtgcagc
aagttatttcttctgtcggagatcatggctgttactgtgagatctattcaaaaagatgca
gaagataaaaagacatcactcaatccaagaccttattttaggttattcatcaattggcta
ctggacttatgttccttggatcccggaactgatggtgcaaactttcaggttctatcagct
tttgccagtgcattccacgcgttgcagcctcttaagtttcccgccttcagctttgcatgg
ctagaactggtcagccacagaagctttatgcccaagctacttacagtaaatggccagaaa
ggttggccatatgttcaacgcctgctggtagacttgctccagtttcttgagccatttttg
agaaatgccgaactcggaggaccactggtctctcttgtttatttatatcaattatgcaag
gttaatttcctatacaaagggacactgagagtgttactggtgctgcttcatgactttccg
gagttcctctgcgattatcattttactttctgcgacgtgattccttcaagttgcatacaa
atgcgaaatattattctgagttcttttccacggaacatgaggcttccagatccctcgacc
ccaaatttaaagattgatttgctgccggagatagtagaagctccatgtatcctttctgag
gttgatgctgcgctaaaagcaaaacaaatgaagaatgacgtggacgagtatctcgcttcg
aggcaacagaattctgcatacctaagtgaattgaagcagaagctactcctgtcgtccagc
gaggctagctcagctgaaacccgttacagtgtaccattgatcaactcgcttgtgctatat
actggaattcaggctatccagcagctacaggcgggtgagacacaggctcaaaatgtggtg
gcattgcacatgttcaagtatttaagtatggaacttgatacggaagggcggtacctgttc
cttaatgcaatcgccaatcagcttcgatatcccaacaaccacacccattacttctccttc
atcatgctctatctcttcttcgagtctgaccaggagatcgtacaggagcagataacaaga
gtgttgctggaaaggctaattgtgaacaggccgcatccatggggactcctgataacattc
atagagctgataaagaatccaagatatggcttctggaaacaagccttcatcaggtgtgcg
cctgagattgagaaactctttgaatctgtcgccagatcctgtggtggtctcaagccccct
gacgagggaatggtctccggttgggtctcggacaactctcattag
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integrated database retrieval system
