Brassica napus (rape): 125580832
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Entry
125580832 CDS
T04128
Name
(RefSeq) probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125580832
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125580832
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125580832
NCBI-ProteinID:
XP_048602016
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Position
C1:51125789..51127910
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AA seq
469 aa
AA seq
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METARLLVCVICIASLIPTLRANVAETDEYWVTKANEARRRTLMAYHPDPYQIVDHFHER
HYDNSTDVEEMEENASEEEDDIEMISSATNSTRRSLRGRGKGKGRGKWSKLKGPCTASNP
IDKCWRCQPDWARRRKKLVKCVRGFGYKTTGGKRGRIYVVTSNRDDDTVNPRPGTLRHAV
IQNEPLWIIFKHDMSIRLCQELMINSHKTIDARGTNVHIAYGAGITMQYVHNIIIHGLHI
HHIVQGRGGMIRNSNDHFGFRGVADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTG
ITISNSHFTHHNDVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVNND
YTHWELYAIGGSQSPTILSHGNRFIAPPHLQHYREVTKRDSAPESEWKNWNWRSEKDIFM
NNAYFRQSGNPKFMCSHSRQQMIKPKHGVAVSKLTKYAGALDCRVGKPC
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctaggcttttagtttgtgtgatttgtattgccagtttgattccgacctta
cgagccaatgttgcggagacggatgagtattgggtaacaaaagccaacgaagctcgtaga
cgtacccttatggcttaccatcctgatccttatcagattgtcgaccacttccacgagcgt
cattacgacaactctactgatgttgaagagatggaggaaaacgcttcggaggaagaggac
gacattgagatgatttctagtgcgacgaacagcacaaggaggagtctaagaggtagaggt
aaaggtaaaggtagagggaaatggagcaagctaaagggaccttgcactgcaagtaaccct
atcgataaatgttggcgttgccagccggattgggccaggcgtcgcaagaagctcgtcaag
tgtgtccgtggattcggttacaagaccacaggaggcaaacgtggtcgaatctacgtggtc
acaagcaacagagatgatgacacggtgaaccctagacccggaacactgcgtcacgctgtg
attcagaacgaaccgctctggatcattttcaagcacgatatgagcattaggttgtgccaa
gagctaatgattaatagtcacaagacgatcgatgctcgtggcactaacgtgcacatcgca
tatggtgctgggatcacgatgcagtacgtgcataatatcatcatccatgggcttcacatc
catcacatcgtccagggcagaggtggcatgataagaaactcaaatgaccacttcgggttc
agaggagtggccgatggagatggtatctccatctttggagcaacaaacatttggcttgac
cacatttctatgtctaaatgccaagatggtctcatcgacgctataatgggctccaccggt
atcactatctctaactctcattttacccaccacaacgatgtgatgttgcttggtgcacaa
aatgacaaccacgcggacaagaaaatgcaagtcaccgtggctttcaaccactttggtaaa
ggacttgtgcagaggatgccgaggattcgatggggtttcgtccatgttgtcaacaatgac
tacactcactgggagctttacgctatcgggggtagccaaagtcctaccattctcagccac
ggaaaccgtttcatcgctcctcctcacctacaacattacagagaagtgacaaagagggat
tctgctccagaatcggagtggaaaaactggaactggagatctgagaaagacattttcatg
aacaatgcatatttcagacagtctggaaacccaaagttcatgtgttcacactctagacaa
cagatgataaagcccaaacacggtgttgccgtttcaaagcttaccaaatacgccggagca
ttggattgccgggtcggaaaaccatgctaa
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