Brenneria nigrifluens: EH206_21200
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Entry
EH206_21200 CDS
T06070
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bng
Brenneria nigrifluens
Pathway
bng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EH206_21200 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bng03021
]
EH206_21200 (rpoB)
03400 DNA repair and recombination proteins [BR:
bng03400
]
EH206_21200 (rpoB)
Enzymes [BR:
bng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EH206_21200 (rpoB)
Transcription machinery [BR:
bng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EH206_21200 (rpoB)
DNA repair and recombination proteins [BR:
bng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EH206_21200 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QCR06447
LinkDB
All DBs
Position
complement(4517377..4521405)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEAEGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIVGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPSSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDNVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGHFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKRHEEVTK
LREFIQKAYDLGDDVRQKVDLSTFSDEEVLRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggcaagcgtccgcag
gtgcttgacataccttatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggtcagtacggtctggaagcagcattccgttctgttttccccatacaa
agctatagcggcaattcagagctgcaatacgttagctatcgcctgggcgagccggtattt
gacgttaaagagtgtcaaatccgtggcgtgactttttccgcgccgctgcgcgtcaaattg
cgcctggtgatttacgagcgtgaagcgcctgaaggcaccgttaaagacatcaaagagcaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggcacctttgtgatcaacggt
actgagcgtgttatcgtttctcagctgcaccgcagtccgggcgtattcttcgacagcgac
aagggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgaattcgatccgaaagataacctgttcgtccgtatcgaccgc
cgccgcaaactgccggcgaccattatcctgcgcgcgctgggttactccaccgaacagatt
ctggatttgttcttcgacaagattgtctatgaaatcaatggcaataagttgcagatggat
ctggttcctgaacgcctgcgcggtgaaacggcctctttcgacattgaagcggaaggcaag
gtttacgttgaaaaaggccgccgcatcactgcccgtcatatccgccagttggagaaagac
ggcattgagcgtatcgaagtgccggttgaatatatcgtcggtaaagtgctgtccaaagat
tatatcgatgagagcaccggcgaactgattggcgcggcgaatatggagctgtcgctggat
ctgctggcgaagcttagccagtccggccacaaacggattgaaaccctgttcaccaacgat
ctggatcacggtccgtatatatcggaaaccgtgcgtgtcgatccgtcaagcgatcgcctg
agcgcgctggtggagatttaccgcatgatgcgtcccggcgagccgccgacgcgtgaagcc
gcggaaacgctgttcgagaacctgttcttctccgaagatcgctatgacctgtccgcggtc
ggtcggatgaagttcaaccgttccctgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaagaagctcatcgatatccgtaacggcaagggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggcg
gaaaaccagttccgcgtcggtctggtgcgcgtagagcgtgcggtgaaagagcgtctttcc
ctgggcgacctcgacaccctgatgccgcaggatatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggttccagccagctgtcgcagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctccgcactgggcccgggcggtctgacccgc
gagcgcgccggctttgaagttcgagacgtacacccgacccactatggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcgcag
accaacgagtatggcttcctggaaaccccgtatcgccgcgtgcgcgacaatgtggtaacc
gatgaaatccattacctgtcggcaattgaggaaggcaacttcgttatcgcccaggcgaac
accaacctggacgaagaaggccacttcatcgatgagctggtaacctgccgtaacaaaggc
gagtccagcctgttcagccgcgatcaggtcgaatatatggacgtatccacccagcaggtg
gtatccgtcggggcgtcgctgattcccttcctggaacacgatgacgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaggccgttccgaccctgcgcgccgacaagccgctggtg
ggtaccggcatggagcgtgcggttgcggtcgactccggggttaccgcggtcgcgaaacgc
ggcggcaccgtgcagtatgtcgatgcgtcgcgtatcgtgatccgcgttaacgacgacgag
atgtatccgggcgaagccgggatcgacatctacaacctgaccaaatacacccgttccaac
cagaacacctgcatcagccagatgccgtgcgtgtcgctgggcgaaccggttgagcgcggc
gacgtgctggcagacggcccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtggcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctccgag
cgcgtggtgcaggaagaccgtttcaccaccatccacattcaggaactggcctgcgtgtcg
cgcgacaccaagctggggcctgaagagatcaccgcggatatcccgaacgtgggcgaagcg
gcgctatccaaactggatgagtccggcatcgtttatatcggtgcggaagtgaccggcggc
gatattctggtaggcaaggtcacgccgaaaggcgaaacccagctgaccccggaagagaag
ctgttgcgcgccatcttcggcgagaaggcctccgacgttaaggactcctcgctgcgggtg
ccgaacggcgtttccggtacggttatcgacgtacaggtctttacccgcgacggcgtggaa
aaagacaaacgcgcgctggaaatcgaagagatgcagctcaagcaggccaagaaagacctg
accgaagagctgcaaatcctggaagccggtctgtttgcccgtatccatgcggtgctggtt
tccggcggcgtggaagcggacaaactggacaaactgccgcgcgagcgctggctggaactg
ggtctgactgatgaagagaaacagaatcagctggaacagttggccgaacagtacgacgaa
ctgaagcacgagtttgagaaaaaactcgaagccaagcgccgtaaaatcacccagggcgac
gatctggcgccgggcgtgctgaaaatcgtcaaggtgtatctggccgttaagcgtcagatt
caaccgggcgacaagatggccggccgtcacgggaacaagggcgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggcgtgccggtcgacatcgtgctgaacccg
ctgggcgtaccgtcgcgtatgaacatcggtcagattctggaaacccacctgggtatggcg
gcgaaaggcatcggcgacaagatcaacgccatgctgaagcggcacgaagaagtgaccaag
ctgcgcgagttcatccagaaagcgtacgatctgggcgacgatgtgcgtcagaaggttgac
ctgagcactttctccgacgaagaagttctgcgtctggctgagaacctgaagaagggcatg
ccgattgcaacgccggtattcgacggtgcaaaagagaaagagatcaaggaactgctgcag
atgggcggtatcccgacctccggtcagatcacgttgtttgacggccgtaccggcgagcag
tttgagcgccaggttaccgtcggctatatgtatatgctgaagttgaaccacttggtcgac
gacaagatgcacgcccgttccaccggttcttacagcctggtcactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggcgcagcctataccctgcaggaaatgctgacggttaaatccgatgacgtgaacggc
cgtaccaagatgtataaaaacatcgtggatggcaatcatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaagagtaa
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