Bombiscardovia nodaiensis: KIM372_13260
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Entry
KIM372_13260 CDS
T09715
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIM372_13260 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnk03021
]
KIM372_13260 (rpoB)
03400 DNA repair and recombination proteins [BR:
bnk03400
]
KIM372_13260 (rpoB)
Enzymes [BR:
bnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIM372_13260 (rpoB)
Transcription machinery [BR:
bnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIM372_13260 (rpoB)
DNA repair and recombination proteins [BR:
bnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIM372_13260 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDR53419
UniProt:
A0ABM8B946
LinkDB
All DBs
Position
complement(1679712..1683281)
Genome browser
AA seq
1189 aa
AA seq
DB search
MAAKQAVTKSSTKVQARADAEAIKLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGN
ERWKQRVEEDEANGTHVVPHVSGLAEVFEEISPIENFAQTMSLAFSDPYFEEPRHTVQEC
KEKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVTQLVRS
PGVYFDRTPDRTSDKEVFGAKIIPSRGAWLEFEIDKRDTLGVRVDRKRKQSAIVFLMAIG
MSKAEIRKAFKGYPLVLDALEKEPIETQDEALTDLYRKIRPADTASPEAGKNLLESFYFN
NKRYDLARVGRYKINRKLGLEADFNDRSLHPEDIVATIKYLVSLHDGAKSFPGKRDGEDA
ELRVDVDDIDHFGNRRVRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIR
PLNATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHYG
RMCPIESPEGPNIGLIGSLATFARVNPFGFIETPYRKVIEGQVTDDVVYMTADQESEHTI
AQANQELTDDGHFVEDQALVRNAEAEATDVPVSEVDLMDVSPRQMVSVGASLIPFLEHDE
GHRALMGTNMQRQAVPLVKSERPLVGTGSEWRSAVDSGDVILAEKPGVVTYVSADIIRVM
NDDGTQSSYRLAKFQRSNQTNCYNQVPLIKDGERVEAGTVLADGPATQKGEMALGKNVLV
AFMPWNGYNYEDAVIISQRLVRDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAV
ANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPH
GEVGTVIQIKEITREEAEEDGDELPNGVNRMIRVYVAQHRKITQGDKLSGRHGNKGVISR
ILPEEDMPFLPDGTPIDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDISLDPDLEAEWK
KFVPQGAEKGEPGTPVATPVFDGVRPETIRGLLKSTLPDRDGNKLVGDNGKAVLFDGRTG
EPFPKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLHEMMTTKSDDVDGRVRAYGAIVRGENLPPAGIPESFKVLLKEMQSLSLNVE
VLNAEGNVIEMKDEDDDPVDASNDLGFNIGARPDAAAKVDQSVPEPEYR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttggctgccaaacaagcggtaacaaagagtagtacaaaagttcaagcacgcgccgacgct
gaagctatcaagctccacaaggcatcggaccgcgtcaatttcggctccattaaagagcct
atcgacgtaccctacctgctaggcgtgcagaccgacagcttcgattggctgatcggcaac
gagcgctggaagcagcgggtagaagaggacgaagccaacggcacgcacgtggtgcctcac
gtctccggactggcggaagtgttcgaggagatctctcctatcgaaaacttcgcccagacc
atgagcctggctttttccgacccatactttgaagagccacgccacacggttcaggagtgc
aaggagaaggactacacctactctgcgcccctgtacgtgaacgctgagttcgagaacggc
gagaccggcgagattaagagccagaccgtcttcatgggagacttccccctacagacgcct
cacggcaccttcatcatcggcggcaccgagcgcgtgatcgtcacgcagctggtgcgctct
cctggcgtgtacttcgaccgcacaccggaccgcacttccgacaaggaagtcttcggggcc
aagattatcccgagccgcggcgcctggctggagttcgagattgacaaacgcgacaccctg
ggtgtgcgcgtggaccgcaagcgcaagcagtccgccattgtcttcctgatggccatcggt
atgtcgaaggccgagattcgcaaggctttcaagggctacccgctggtgctcgacgctctg
gagaaggagcccatcgagacccaggacgaggccctgaccgacctctaccgcaagattcgc
ccggcagacaccgcctcgcccgaggctggcaagaacctgctcgaatccttctacttcaac
aacaagcgctacgacctggcgcgcgttggtcgctacaagatcaaccgcaagctgggcctg
gaagccgacttcaacgaccgcagcctccacccggaggacattgtggccaccatcaagtac
ctggtgagcctgcacgacggcgccaagtccttcccgggcaagcgcgatggggaagatgcc
gagctgcgcgtagacgtggacgacattgaccactttggcaaccgccgtgtgcgtcaggtg
ggcgagctgattcaaaaccagctgcgtaccggcctgagccgcatggagcgcgtggtccgc
gagcgcatgaccacccaggacgctgaggccattaccccccagtccttgattaacattcgc
cccctgaacgcgaccatcaaggagttcttcggaacttcccagctctcgcagttcatggat
cagaataaccccctgtccggcgtgaccaacaagcgccgcctctcggccctaggccccggc
ggtctttctcgcgaccgtgcttccatggaagtgcgagacgtgcacccctctcactacgga
cgtatgtgcccgattgagtctcctgaaggcccgaacatcggcctgatcggctcgctggcc
accttcgcccgcgtgaaccccttcggtttcatcgagaccccctaccgtaaggtgattgag
ggccaggtgaccgacgatgtagtctacatgactgccgaccaggagtctgagcacaccatc
gcccaggccaaccaggagctgacggacgacggccactttgtggaagaccaggccctggtg
cgaaacgccgaggcagaggctaccgatgtgcccgtctccgaagtggacctgatggacgtg
tccccccggcagatggtgtccgtgggcgcctccctgattccgttcttggagcacgacgag
ggccaccgagccctgatgggtaccaacatgcagcgtcaggctgtgccgctggtcaagtcc
gagcgccctctggtgggtaccggctccgagtggcgctctgctgtggactctggcgacgtg
attttggctgaaaagccgggcgtggtcacctacgtttccgccgacatcatccgcgtgatg
aacgacgacggcacgcagtcttcctaccgcttggccaagttccagcgctccaaccagacc
aactgctacaaccaggtgccgctcattaaggacggcgagcgcgtggaagctggtacggtt
ctggccgacggtcccgccacccagaagggcgagatggccttgggcaagaacgtgctcgtg
gccttcatgccttggaacggctacaactacgaggacgctgtgattatctcccagcgcctg
gtgcgtgacgacacgctctcctccatccacatcgaggagtacgagattgacgcccgtgaa
accaagctgggtgccgaggaaatcacgcgcgacctgcccaacgtgggcgaggacgccgtg
gccaacttggacgagcgcggcattatccgcatcggcgccgaagttgaggccggcgacatc
ctggtgggtaaggtcacgcctaagggcgagactgagctgaccccagaagagcgactcctg
cgcgccatcttcggcgagaagagccgcgaagtgcgcgacacctccctgcgggtgccccac
ggcgaggtcggtaccgtcatccagattaaggaaatcacccgggaagaggccgaggaggac
ggcgacgagctgcccaacggcgtcaaccgcatgattcgtgtctacgtggcccagcaccgc
aagattacccagggcgacaagctctcgggtcgtcacggcaacaagggtgtcatctcgcgc
attctgcccgaggaagacatgcccttcctgcccgacggcacccccatcgacatcatgctc
aaccccttgggcgtgcccagccgaatgaacttgggccaggtgctcgagctgcacttgggc
tggattgcacacgctggctgggacatcagcctggatccggacctggaagccgagtggaag
aagttcgtgccccagggcgcggagaagggcgagccgggcactccggtggccacccccgtg
ttcgacggtgtgcgcccagagaccattcgcggcctgctgaagtccaccctgcccgaccgc
gacggcaacaagctcgtgggcgacaacggcaaggctgtgctcttcgacggccgtaccggc
gagccattcccgaagcccatctccgtgggctacatgtacatgttgaagctccaccacttg
gtcgacgacaagattcacgctcgctccactggtccttattccatgattacccagcagccc
ctgggcggcaaggctcagttcggcggccagcgtttcggcgagatggaggtgtgggcactt
gaggcttacggtgccgcttacaccctgcacgagatgatgaccaccaagtctgacgacgtg
gatggccgtgtgcgcgcttacggcgcgattgtgcgcggcgagaacctgccaccagcaggc
atccccgagtccttcaaggtgctcttgaaggaaatgcagtcgctctccctgaacgtggaa
gttttgaacgctgagggcaacgtcatcgagatgaaggacgaggacgacgacccggtcgat
gcctccaacgatctcggcttcaatatcggtgcccggcccgatgccgccgccaaagttgac
cagagcgtacccgaacccgagtaccgctag
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integrated database retrieval system
