Brettanomyces nanus: FOA43_002261
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Entry
FOA43_002261 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bnn
Brettanomyces nanus
Pathway
bnn03022
Basal transcription factors
bnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOA43_002261
09124 Replication and repair
03420 Nucleotide excision repair
FOA43_002261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnn03021
]
FOA43_002261
03400 DNA repair and recombination proteins [BR:
bnn03400
]
FOA43_002261
Transcription machinery [BR:
bnn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOA43_002261
DNA repair and recombination proteins [BR:
bnn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOA43_002261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
62195662
NCBI-ProteinID:
XP_038778488
LinkDB
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Position
2:complement(594663..596453)
Genome browser
AA seq
596 aa
AA seq
DB search
MSAPIQSSSTSSDLFKSTINEYLDNLPEAVHSQLYRSPETCLAIFRLLPSLAKFYIMTLL
FQETAIPYADLNRWIKPQKATGHHRNANKIYQNESIKRLKALNLLKEIRKKVKHPTTGKL
TTIVFVQLNPIFRQSFRDALTGFRDGIPRDQSEKIAETIEEAEAESEKTLETSSVSSSSG
PSLENLFATKFKITVGFLDSYCLAKWENILHFMVGSKIKHYPSIGVLTLLRYSGLMELPS
DRRHRQSVDADEDNFVVDDHYIDGERGPPSGEELKSLLITKNGFQFLLQDINSQIWTLLL
QYLKMSEKLMMNPVDVLNFIFMLGSLELGEGYPIKVLSDTQLIMLEDLVDYGLIFYPKSE
NSEDTKGRIFYPTRLATSLTSESTKFKTASTVLNEQISNTDSNQGKIIIETNFKIYCYTT
SPLQIAILNLFVHLKIRFANMVTGIVTRESVRGALINGITADQIITYLESHAHPGMVKKA
EEKYAKKMEFETSIGNSYTADQIKYEVLPPTVVDQIKLWQLELDRIQTFKGYLYKDFAND
FEFEKLLSYGEEIGVIVWRDKIHRKFFVTSDGNAQLIEYANRILRKSASRSVTPST
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcacctatacaatccagttctacatcttcagacctcttcaagtctaccattaat
gagtaccttgacaatcttccagaggcagttcattctcagctttatagatctcctgagaca
tgtcttgccatcttcaggttgcttccgtctttggccaagttttacataatgacactttta
tttcaagaaactgccataccttacgcagacttaaatcgatggattaagcctcaaaaggct
actggacaccatagaaacgccaataagatctatcagaacgagtccattaaacgattaaag
gcccttaatctattgaaggagattcgaaaaaaggtgaagcatcctaccacagggaaattg
accactatagtgtttgttcagctaaatcccattttcaggcagagttttagagatgcattg
acaggttttagagacggtataccgcgtgatcaaagcgagaagatagctgagactatagaa
gaagccgaagcagagtcagagaagaccttggaaacttcatctgtttcctcttcttccggt
ccaagcttagaaaatctctttgctaccaaatttaagattacggtaggattcttggatagt
tattgtcttgccaaatgggaaaatatccttcatttcatggttggttctaagataaagcat
tatccgagtataggagttcttactttgctaaggtatagtggattaatggagctcccgtcg
gacagaagacacagacagagtgtggatgctgacgaagacaactttgtcgtggatgatcat
tatatagatggagaaagaggtcctccttccggtgaagagttgaaaagtttattgattaca
aagaatggattccagtttttgttgcaagatatcaactcacaaatatggacgttattactt
caataccttaaaatgtctgagaagttgatgatgaatcctgttgatgttcttaattttatc
tttatgcttggatctctagagttgggcgaaggataccctattaaggtgctcagtgacact
cagctgatcatgctagaagatttagtcgactacggtcttatcttttatcctaagtcggaa
aatagtgaagacactaagggtaggatcttttatccaacgcgtcttgctacttcgttgaca
tcagagagtaccaaattcaagacggcttcgacagtgctgaacgagcaaatatccaacacg
gacagtaatcagggtaaaatcatcatagagacaaatttcaagatatactgctatactacg
tcaccccttcagattgctattttgaacctattcgttcatttaaagattcgttttgcaaat
atggtgacaggcattgtgacacgtgagtctgtgcgcggtgctttgatcaatggaatcacg
gccgatcagattatcacttatttggagtcccatgctcatcctggtatggtcaagaaggcc
gaagagaaatatgctaagaaaatggaattcgagacctcgattggtaactcttatacggct
gaccagattaaatacgaggtgcttccaccgacagtagtggatcaaattaagctttggcag
ttggaattggacagaattcaaacgtttaagggctacttgtacaaggatttcgccaacgat
ttcgagtttgaaaagctcctcagttacggagaagaaataggtgttatagtatggagggac
aagatccatagaaagttctttgtcactagtgatggcaatgctcaactcatagagtacgca
aataggatcttgaggaaatccgcttccagatcggtcactccttccacctga
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