Brassica oleracea (wild cabbage): 106299135
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Entry
106299135 CDS
T04124
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106299135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106299135
Enzymes [BR:
boe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106299135
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106299135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
Motif
Other DBs
NCBI-GeneID:
106299135
NCBI-ProteinID:
XP_013590721
LinkDB
All DBs
Position
C6:2810758..2813804
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AA seq
400 aa
AA seq
DB search
MSYNGASMNPPPTIVAVSTSSKHVKLERETELRIEVSDTPLKLRVVNGTAQTDGTTETDY
TADETPMVSYLNVHAILNARRRVAQASESTQGPRVIVVGPEDSGKRTLAMLINWAAKEAW
KPTFVDFDVTQGSVSIPGSVAATPIETPLDPVVGFPLDMPLVYYYGHTKPGTNVELYKAT
VMELGRVLERQFLGNYESRAAGMVINTMGGYDEVLLHAIETFNASVVLVLGQEKLYSKLK
HVLSSKSNVDVVKLHKSGGVVAKNSEFRKTARSCRIQEYFYVLSKELSPYANTSSISDVK
VFRIGGRPQAPRSALPMGSDPVSDPLKVTHVNIDDRDVLHSVLAVSYAQEPDRIVSSNVS
GFVYVTEVDVQRKTITYLAPSQGTLPSKFLVAGSLSWKKR
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaatggtgcgtcgatgaacccaccccctacgatcgtcgcggtttccacgtct
agcaaacatgtgaaactcgagagagaaaccgaactcaggatcgaagtctccgacacgcct
ctcaaactccgtgtcgtgaacggaaccgcccagacggacggtacaaccgaaacagactac
acagcagacgagacaccaatggtcagctaccttaacgtgcatgcaatcctaaatgcaaga
agacgtgttgcccaagcttcagagtctacacaaggacctagggttattgtagtaggtccc
gaggattccggaaagagaacgttggcaatgcttatcaactgggcagctaaagaggcgtgg
aagcctacgttcgttgactttgacgttacccaaggctcggtttcaatacctggctctgtc
gctgctacacctatagagacgcctcttgatcctgttgtagggtttcctctagatatgccc
ttagtgtactactacggtcacactaaaccaggtaccaacgttgaactctacaaagctacg
gtgatggagcttggaagagtgctggagagacaatttcttgggaactatgagtctcgagct
gctggtatggtgatcaacaccatgggtggttacgatgaggtgcttctccacgcgattgaa
acattcaacgcctcggttgttcttgtgttgggtcaggagaagctctacagcaagcttaaa
catgtgttgagtagtaagagtaatgttgatgtcgtgaagcttcataaatcaggtggagtt
gttgctaagaacagtgagttccgtaaaacagcaaggagttgtcggattcaggaatacttc
tacgttctgtccaaagaactatctccgtatgctaatacctctagcatcagcgatgtgaaa
gtgttccgcattggtggtagaccacaagctccaagatcagctcttccaatggggtctgac
ccggtttctgatccgttgaaggtaacgcatgtgaatatcgatgaccgggatgtgctgcat
tctgttctggctgtctcgtatgcacaagaaccagaccggatcgtgtcaagtaatgtttcc
gggtttgtgtatgtaacggaggttgatgtgcaaaggaagacgattacgtatttagcaccg
tcgcaagggacattacccagcaagttcttggtggctggatctttgtcttggaagaaaaga
taa
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