KEGG   Brassica oleracea (wild cabbage): 106299135
Entry
106299135         CDS       T04124                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106299135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106299135
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     106299135
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     106299135
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N
Other DBs
NCBI-GeneID: 106299135
NCBI-ProteinID: XP_013590721
LinkDB
Position
C6:2810758..2813804
AA seq 400 aa
MSYNGASMNPPPTIVAVSTSSKHVKLERETELRIEVSDTPLKLRVVNGTAQTDGTTETDY
TADETPMVSYLNVHAILNARRRVAQASESTQGPRVIVVGPEDSGKRTLAMLINWAAKEAW
KPTFVDFDVTQGSVSIPGSVAATPIETPLDPVVGFPLDMPLVYYYGHTKPGTNVELYKAT
VMELGRVLERQFLGNYESRAAGMVINTMGGYDEVLLHAIETFNASVVLVLGQEKLYSKLK
HVLSSKSNVDVVKLHKSGGVVAKNSEFRKTARSCRIQEYFYVLSKELSPYANTSSISDVK
VFRIGGRPQAPRSALPMGSDPVSDPLKVTHVNIDDRDVLHSVLAVSYAQEPDRIVSSNVS
GFVYVTEVDVQRKTITYLAPSQGTLPSKFLVAGSLSWKKR
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgtcttacaatggtgcgtcgatgaacccaccccctacgatcgtcgcggtttccacgtct
agcaaacatgtgaaactcgagagagaaaccgaactcaggatcgaagtctccgacacgcct
ctcaaactccgtgtcgtgaacggaaccgcccagacggacggtacaaccgaaacagactac
acagcagacgagacaccaatggtcagctaccttaacgtgcatgcaatcctaaatgcaaga
agacgtgttgcccaagcttcagagtctacacaaggacctagggttattgtagtaggtccc
gaggattccggaaagagaacgttggcaatgcttatcaactgggcagctaaagaggcgtgg
aagcctacgttcgttgactttgacgttacccaaggctcggtttcaatacctggctctgtc
gctgctacacctatagagacgcctcttgatcctgttgtagggtttcctctagatatgccc
ttagtgtactactacggtcacactaaaccaggtaccaacgttgaactctacaaagctacg
gtgatggagcttggaagagtgctggagagacaatttcttgggaactatgagtctcgagct
gctggtatggtgatcaacaccatgggtggttacgatgaggtgcttctccacgcgattgaa
acattcaacgcctcggttgttcttgtgttgggtcaggagaagctctacagcaagcttaaa
catgtgttgagtagtaagagtaatgttgatgtcgtgaagcttcataaatcaggtggagtt
gttgctaagaacagtgagttccgtaaaacagcaaggagttgtcggattcaggaatacttc
tacgttctgtccaaagaactatctccgtatgctaatacctctagcatcagcgatgtgaaa
gtgttccgcattggtggtagaccacaagctccaagatcagctcttccaatggggtctgac
ccggtttctgatccgttgaaggtaacgcatgtgaatatcgatgaccgggatgtgctgcat
tctgttctggctgtctcgtatgcacaagaaccagaccggatcgtgtcaagtaatgtttcc
gggtttgtgtatgtaacggaggttgatgtgcaaaggaagacgattacgtatttagcaccg
tcgcaagggacattacccagcaagttcttggtggctggatctttgtcttggaagaaaaga
taa

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