Brassica oleracea (wild cabbage): 106307708
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Entry
106307708 CDS
T04124
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106307708
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106307708
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106307708
NCBI-ProteinID:
XP_013600193
UniProt:
A0A0D3DSP8
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Position
C8:28460718..28464308
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AA seq
476 aa
AA seq
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MMLQRSCIVLFSLSLFVPHMGFAMLNKTLLLIPHPDPELVAHDVHWRVNASIWRRQAMDT
TDQAGSNQCFTGNPIDDCWKCDTNWPNNRQRLADCGIGFGQYALGGKGGRFYFVTDSSDD
DVVDPKPGTLRYGVIQVEPLWIVFPSNMMIKLKHELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNIIIHNIHIHHCHPSGNTNIRSSPTHYGLRTESDGDGISIFGSKDIWIDHCSLSR
CKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGDKLVQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVDPKSAAFIDQITFHCGVLGVGGRNN
NLGMWTTTGSEGSGGLDSYNDYNDEMSGTCSTNRLSLSVIVIAFMFNLMSYLFMLL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtacttttctcactttctctgtttgttccacacatg
ggtttcgccatgctcaacaaaactctccttctcataccacatcccgacccagagctagtc
gctcatgatgttcattggagggttaatgcctctatatggagacgtcaagctatggatacg
acggaccaggccggttcaaaccagtgcttcacgggtaacccaatcgatgactgttggaaa
tgtgacacaaactggcctaataaccgacaaaggctagccgattgtggaatcggtttcgga
cagtatgccttgggaggcaaaggcggccggttttacttcgtcactgattcctccgacgat
gatgtcgtcgaccctaaaccgggcactctcagatatggagtgatacaagtagagccactg
tggatagtgttcccaagcaacatgatgataaaattaaagcatgagctaatattcaacagt
tacaagactcttgatggaagaggggctaatgttcatattgttggtggtggttgcatcacc
cttcaatatgtctccaatatcatcattcacaacattcatatccaccattgtcacccatcc
gggaatactaacatacggtcaagtccaacgcactacggattaagaacggaatcggacggt
gatggtatctccatctttggatcaaaggacatatggatcgaccattgttctctatcaaga
tgtaaagatggtttgatagatgctgtgatgggatccacagggattacaatatcgaacaac
ttcttctcacaccacaatgaagtcatgcttcttggtcacagcgatcactacgagccagac
agtggcatgcaggtaaccattgcatttaatcacttcggagataaattggtacaaaggatg
cctaggtgtagacgtggatacatccatgtggttaacaatgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccaactattaatagtcagggtaaccgctatacggcc
ccaaccaacccgtttgcgaaagaggtgactaaaagagtagaaacgcctgatggcgattgg
aaagggtggaactggagatcggagggagacatcttggttaatggagcgttcttcgtggca
tctggagaaggtgctgagatgaggtacgagaaggcgtatagcgtcgaccctaaatctgcc
gcgttcatcgaccaaatcacatttcattgcggcgttcttggcgttggtggcaggaataac
aatttggggatgtggactactactggatccgaaggtagtggcggtttagattcttataat
gactacaacgatgaaatgtctggcacctgttcaaccaaccggttatctttgtcggttatt
gttatagctttcatgttcaatttgatgtcatatttgttcatgttgttgtaa
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