Brassica oleracea (wild cabbage): 106310394
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Entry
106310394 CDS
T04124
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106310394
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106310394
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106310394
NCBI-ProteinID:
XP_013603081
UniProt:
A0A0D3DPP1
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All DBs
Position
C8:complement(21011086..21013205)
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AA seq
458 aa
AA seq
DB search
MTAAFLNIGGYLFVFCLSLLATLTPHVGANVAVFDNYWLQRQGDALKQTIASFDPNPLNV
TDHLNYHVALAVGATESINSTRRELSQVRNGRKLKRSGKCVAYNPIDRCWRCHGDWEKNR
KKLADCVLGFGRRTTGGKDGPIYVVNDASDDDLINPKPGTLRHAVTRDGPLWIIFGSSMI
INLQQELIITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYIKHVVPKSGGLIRDSE
QHIGLRTVSDGDGISLFGATNVWIDHVSMTRCSDGMIDAILGSTAITISNSHFTDHEEVM
LFGANDKHVIDKKMQITVAFNHFGKRLDQRMPRCRFGTIHVVNNDYTHWEMYAIGGNMNP
TIISQGNRFIAPPNEQAKQITKREYTPYVDWKMWNWQSEGDYFLNGAYFVQSGKQNAWSP
KPVNPVPRKFAIRPQPGTMVRKLTMDAGALGCKPGTPC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcgtttttgaatattggcggctacctttttgtcttctgcttgtcgttatta
gcaacattgactccacacgttggagccaatgttgctgtcttcgacaactactggttacaa
cgtcaaggcgatgcgttgaaacaaaccattgcctctttcgatcctaatcctcttaacgtc
accgaccatttgaattaccatgtcgctttagccgtgggcgccacggaatcaatcaacagc
acaaggagagagctctcacaggtgagaaatggccggaaactaaagagaagcggaaaatgc
gtagcgtacaaccctatagacagatgctggcgatgccacggtgactgggagaaaaaccgt
aagaaactagcggactgtgtgctcggattcggcaggagaaccaccggaggaaaagacgga
cccatctacgtcgtcaacgacgcctccgatgacgatcttatcaaccctaagccaggaacg
ttaaggcacgcggtgacaagagacggaccgctttggatcatattcggaagcagcatgatc
attaacttgcaacaagaactgatcataacgagcgataaaacaatagacggacgaggagct
agggtttacatcatggaaggtgctggattaacgctgcagtttgtgaacaatgtgatcata
cacaatatttatatcaagcacgttgttcctaagagcggtggtttgatcagagactctgag
cagcatatagggcttaggacagtgagtgatggcgatggaatcagtttgtttggtgcaact
aatgtttggatcgatcatgtctcgatgactagatgttcagatggtatgatcgatgcgatt
cttggctccactgctataactatttccaacagccatttcaccgaccatgaagaggtgatg
ctatttggggcaaatgacaagcacgtgatcgacaagaaaatgcagataacggttgcgttc
aaccactttggtaagagactggatcaaaggatgcctcgttgcagattcggaacgatccat
gtggtgaacaatgactacacacattgggagatgtacgcaattggtggaaacatgaaccct
acaatcattagccaaggcaaccgtttcattgctcctcctaacgaacaagccaaacagatt
acaaagagagagtacacaccttacgttgactggaaaatgtggaattggcaatcagaagga
gattacttcttgaatggagcttactttgtgcaatccggaaaacaaaatgcatggagccct
aaaccggttaaccctgtcccaagaaagtttgccatacgacctcaaccgggaacaatggta
cgtaaactcaccatggacgcaggagcacttgggtgcaagccgggcacaccctgctga
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