Brassica oleracea (wild cabbage): 106312230
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Entry
106312230 CDS
T04124
Name
(RefSeq) probable pectate lyase 1 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106312230
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106312230
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
XFP
Motif
Other DBs
NCBI-GeneID:
106312230
NCBI-ProteinID:
XP_013605125
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Position
C8:complement(743471..746052)
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AA seq
431 aa
AA seq
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MTVLPTWILATMCLFFFVGAMENKTHDKISSLSKSDQIEWNKHAVTNPDEVADEVLALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQFVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFESSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTKDRAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLAAKSSSLVATITSDAGA
LPCRRGSQCSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacggttcttccgacatggattttagctacgatgtgtctattcttcttcgtcggagca
atggagaacaaaacacacgacaagatctcatctctctccaaatcggaccaaatcgaatgg
aacaaacacgcagtgacgaatccagatgaagtagcggacgaagttctcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctgggttactttacttgcggaacaggc
aaccccatcgacgattgctggcgttgcgatcgcaactggcacaagaaccgcaaacgccta
gcggactgcggaatcgggttcggaagaaacgcgatcggcggtcgcgacgggcgtttctac
gtggtcactgacccaagtgaccacgacgctgttaaccctagaccgggtacattacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgtgatatggtgattcagcta
aaacaagagctcatcgttaacagcttcaaaaccatcgacggacgtggcgcaaacgttcac
atcgctaacggcggttgcataacgattcagtttgtgacgaacgttatagtccatggattg
catattcatgactgtagaccgaccgggaacgctatggtgagaagctcggagacgcatttt
gggtggaggacgatggcggatggtgacgcgatttcgatttttgagtcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgcagtcatgggctcg
acggccattaccatctctaacaaccacatgactcaccacaacgaggttatgttgctcgga
catagtgattcttatacgaaggatagagctatgcaagttaccatagcttataaccatttt
ggggtcggacttattcaaagaatgccaaggtgtcgacatggttatttccatgtcgtgaac
aatgactacactcactgggagatgtacgccatcggtggaagcgcaaacccgacaattaac
agtcaaggaaaccgctacgccgctcctaaaaatccttttgctaaagaggtgacaaagaga
gtggacacaccggcgagtcactggaaaggatggaactggagatcggaaggagacttgctt
cagaacggagcttacttcacttcttcaggagccgctgcatctggcagctacgcacgtgca
tctagcctcgccgctaaatcttcttcattggttgcaaccattacttctgacgctggagct
ctaccttgtcgcagaggtagtcaatgttcctcgtag
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