Brassica oleracea (wild cabbage): 106333129
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Entry
106333129 CDS
T04124
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106333129
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106333129
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106333129
NCBI-ProteinID:
XP_013627061
UniProt:
A0A0D3BKW1
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Position
C3:complement(57838137..57840081)
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AA seq
394 aa
AA seq
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MTLFSNICVFVALSLCQSLVLAINNGYYGYNPSVASYLPEKPQNIMNPMDSCWRHKSDWS
ANRKDLADCAVGFGSSALGGKKGNIYVVTNPNDNAANPKPGSLRYGVIQDKPLWITFAKD
MAITLENELMVNSYKTIDGRGAKVEIAYGPCITIQQVTNVIVHGISIHDCKPAKYGMVRS
STTHVGHRKGSDGDAIAISGSSHIWIDHCFLASCTDGLIDVIHASTGITISNNYFTQHVK
VMLLGHNDNFVQDVNMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSA
DPTIFSEGNYFIASDKSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSVDLP
YSSAQRFTVAPGNMVPSLTADAGPLNCNRNLPCY
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgactcttttctccaatatttgtgtcttcgtggcactatccctatgtcagtccttggtt
ctagccattaacaacggctattacgggtataacccatcggtcgccagctacctgccggag
aaacctcagaacatcatgaatccaatggactcgtgttggcggcataaatctgactggtcc
gctaaccgcaaagatttagccgattgcgcagttgggtttggttcatctgccttaggcggc
aagaaaggtaatatatatgttgtcacaaaccccaacgacaatgcagcgaaccctaaaccg
ggttctctgcgatacggtgtgatccaagacaagccgctgtggatcactttcgctaaagat
atggccataaccttagagaatgagctcatggtgaatagctataagaccatagatgggaga
ggggcaaaagtggaaattgcgtacggaccgtgcattactatacaacaagtgacgaacgta
attgtgcatgggatcagcatccacgactgcaaaccggcgaagtatggaatggtgaggagt
agcacaacgcatgtcggtcatcgaaaaggatcggacggtgatgcgatcgctatttccggt
tcgtctcatatttggatcgaccattgttttctagcgagttgtacggatggcctgatcgat
gtgatacatgcttcaacgggaatcacgatctccaacaactattttactcagcatgttaaa
gtgatgttgctcggacacaacgataacttcgtgcaagatgtgaacatgaaagtgaccgtg
gcattcaatcattttggaccaggacttgtggagagaatgccaagggtaagacgaggttac
gctcatgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgcc
gatccaaccattttcagtgaaggaaactatttcattgcttctgataaatctaacagtaaa
gaggtgacaaagagagaagtgaaaggagggtggaacaattggagatggagaacttcaaag
gacgttttcaagaacggagcttacttcgtaccttccggttacggcagcgttgatttgcca
tacagttccgctcagcgattcacagtggctccagggaacatggttccttctctaaccgca
gacgctggccctctaaactgcaaccgcaatctcccttgttattag
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