Brassica oleracea (wild cabbage): 106336024
Help
Entry
106336024 CDS
T04124
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106336024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106336024
03016 Transfer RNA biogenesis [BR:
boe03016
]
106336024
Enzymes [BR:
boe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
106336024
Messenger RNA biogenesis [BR:
boe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
106336024
Transfer RNA biogenesis [BR:
boe03016
]
Prokaryotic type
tRNA degradation factors
106336024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Motif
Other DBs
NCBI-GeneID:
106336024
NCBI-ProteinID:
XP_013630191
UniProt:
A0A0D3B9K0
LinkDB
All DBs
Position
C3:22254747..22260072
Genome browser
AA seq
908 aa
AA seq
DB search
MLTSPSNALHSTPHFWPIRRSRLLLRPRNFPCFHSGGGNFCSLSLLSARSGPSRFRIRAL
AGPDASEDGGLAFPNHVSVKIPFGNREILVDTGLMGRQASSAVTVTDGETIVYTSVCLAD
VPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFY
NETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNSKAVAGVRVGLIGGEFIVNPTVK
EMEESQLDLFLAGTDSAILTIEGYSNFLPEEMLVKAVKVGQDAVQATCTAIEALAKKHGK
AKMVDAIRLPPPELYKHVKELAGEELSKALQIKSKIARRKAITSLEEKVLTILTEKGYVI
DEAAFGTTEAQPELLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKE
VSSKLLRRRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSSLFTRGETQALAVVTLGDK
QMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPGRREIGHGTLAERALETILPGD
DDFPYTIRVESTILESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGD
GSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLDIMEKALIQAKAGRRH
ILAEMAKCSPPPMLSLSKYAPLIHIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQD
DGTVKIMANDIASLERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGREGLCH
VSELSAEWLAKPEDAYNIGDRIDVKLIEVNEKGQLRLSVRALLPESESDKGSQKQPPTGG
DSTKSSPRKYVNPSLKDRAATTGASGDELVWKKKDVRRASGGDKPMKSNSSSNEEDRGSL
VNGEATIS
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgagtcccagcaacgcgcttcacagcactccacacttctggcctattcgccgg
agcaggcttcttctccgtccccggaacttcccttgtttccactccggcggaggaaacttc
tgctcgctctctctcctctccgcaagaagtggccctagtagatttagaatcagagctcta
gctggaccagatgcttccgaggacggtggtctggcgtttcctaaccacgtttccgtcaaa
atccctttcggaaacagagagattttggttgacactggtcttatgggaagacaagcaagt
tctgcagttacggttacagatggagaaactattgtctacacatcagtgtgtctagctgat
gttcctagtgagccttcagattttctccccctttatgttcactatcaggagcgtttctct
gctgttggtcgaactagtggtggattttttaagcgagaagggagaaccaaagatcacgag
gttctgatttgtaggttgattgatagacctctacgccccactatgcccaaaggtttctac
aacgaaactcagatattatcctgggttttgagctacgatgggttacacgcacctgatgct
ttagctgttacatctgctggaatagctgtagctctttcagaagtaccaaactcaaaggct
gttgcaggagttagagtgggtcttattgggggcgagtttatcgtcaacccaacggtgaag
gagatggaagaatcacagctagatttgtttctagctggaacagattctgctattttaaca
atagagggatatagtaattttcttcccgaggaaatgttggtcaaagctgttaaagttgga
caggatgcagtacaagctacatgcactgctattgaagctttagcaaagaaacatggaaag
gccaagatggttgacgctataagattaccacctcctgagctttacaagcatgtgaaagaa
cttgctggtgaggaattgagcaaagcgctacagattaagagcaaaatagcaagaaggaaa
gcaataacgtccctggaagaaaaggttttaacgatactgactgagaagggatatgtgatt
gatgaggcagcatttggaaccacagaagcacaaccggagctgttggaggatgaagatgag
gatgaggaagttgttcctgaaggtgaggtggaccaaggtgatgttcacataaggccgatc
cctcggaaacctattcctttgctattttcagaagtagatgtgaagctggtcttcaaagaa
gtatcttcaaagctcctgaggaggcgaattgttgagggaggtaaaagaagtgatggtcga
actccggatgggattcgtccaattaactctagatgtggactgcttccaagggcacatggt
agctctcttttcacacgcggtgaaacgcaggcactggcagttgttactcttggtgataaa
caaatggcacagagaattgacaaccttgagggttctgatgaatacaagagattttatctt
cagtacacttttcctccatcgtctgttggtgaagttgggagaattggagcaccgggtaga
agagaaataggtcatgggacactagcagagcgagcattggagactatattacctggtgat
gatgattttccttacactatacgtgttgagagtacaatacttgaaagcaatggttcttca
agcatggcatctgtttgtggcggttgcttggctttgcaagatgctggagttccagtaaaa
tgctctgttgctggcatagcaatgggaatggtttgggatacagaagagtttggtggtgat
ggatctccccttatcctctctgacataactggagctgaagatgcatctggtgatatggac
tttaaggttgctgggaatgaagatggtgttaccgcgtttcagatggacattaaggtagga
ggaatcactttagatataatggaaaaggctctgatacaggcaaaagctgggcgtcgccat
attcttgctgaaatggcaaagtgctcaccacctcctatgttgagtctctcaaaatacgct
ccgttgatacatatcatgaaggtccatccaagcaaagtatactctcttattggttctggt
gggaagaaagtaaagagtatcattgaagaatcaggagttgaagccattgatatgcaagat
gatggcactgtcaaaattatggcaaatgatatagcaagtttggagagggccaaagcgata
atcagtgggttgacaatggttccagctgttggtgatatctataggaattgtgaaatcaaa
tcaatggctccttatggtgcctttgtagagattgcccctgggagagaaggactttgccat
gtcagtgagctaagtgctgaatggcttgcaaaaccagaggatgcctataatataggagac
cgcattgatgtcaaactaatagaggtgaacgaaaaaggtcagcttcggcttagtgtacga
gctttgcttccggaatcagagtcagacaaaggcagccagaaacaaccaccaactggtggt
gattctaccaagagttcaccaaggaagtatgtgaatccttcgttgaaggaccgtgcagct
actacaggagcatctggggatgaacttgtctggaagaagaaagatgtcaggagagcatca
ggtggtgacaagccaatgaaaagcaatagcagtagcaacgaagaagatagaggcagctta
gtcaatggtgaagctacaatcagctag
DBGET
integrated database retrieval system
