Brassica oleracea (wild cabbage): 106336651
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Entry
106336651 CDS
T04124
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
boe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106336651
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106336651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106336651
04121 Ubiquitin system [BR:
boe04121
]
106336651
03400 DNA repair and recombination proteins [BR:
boe03400
]
106336651
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106336651
Spliceosome [BR:
boe03041
]
Complex B
Other components
Prp19 complex
106336651
Complex C
Prp19-CDC5 complex
106336651
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
U-box type E3
106336651
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106336651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WD40_Gbeta
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_Aladin
NBCH_WD40
eIF2A
PROPPIN
Beta-prop_DCAF4
zf-Nse
WD40_like
U-box
PAS_11
B-prop_COPA_B_2nd
PUMA_CC
DUF1635
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
106336651
NCBI-ProteinID:
XP_013630998
LinkDB
All DBs
Position
C4:9777453..9782125
Genome browser
AA seq
525 aa
AA seq
DB search
MNCAISGEVPEVPVVSTKSGLLFEKRLIESHISDYGKCPVTGEPLTIDDIVPIKSGKVIK
PKLLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANAPLSNGKRAADDEETGPDAKKLCPGISADIITEL
TDCNAALSQKRKKRQIPETLASVDALGRFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GIDATAVIFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRVWRDSGDGQYA
CGHTLNDHSEEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVADDSEKVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVARFDGHTGEVTSISFSENGYFLATAAEDGVKL
WDLRKLRNFRSFSSADANSVEFDPSGSYLGIAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDEKANADDDSAQDS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttctggagaagttcccgaggtgcctgtggtttcaacgaagtcaggt
ttgctcttcgagaagcgattaatcgagagccatatatcggattatgggaagtgcccggtt
actggggagcctcttaccattgatgacattgttcccatcaaatctgggaaggtcataaaa
ccgaaactattgcatactgctagtatccctggattgcttggaacgttccagaatgaatgg
gacggtttgatgctatcaaattttgctctggagcaacaactccatactgcaaggcaagag
ctaagtcatgctttgtatcagcatgattctgcttgtcgcgtgattgctagacttaaaaaa
gaaagagatgaagcacgccaattacttgcagaggttgaacgacatatacctgctgcccca
gaagctgtgacagctaatgctcctctgagtaatggtaaacgagctgccgatgatgaagaa
acgggtcctgatgcgaagaagttgtgccctggcatttctgctgacatcatcacggaattg
acagattgcaatgctgctctctcccagaagcgcaaaaagcgacagattcctgaaacattg
gcttcagtagatgctttggggaggttcactcagctatcaagccacccacttcacaagacc
aacaaacctggcatttgttcaatggacatcttacattctaaggatgtcattgctactgga
ggaattgatgcaactgctgtaatatttgatcgcccttcagggcaaatcttgtcgacactg
actggtcactcgaaaaaggttacaagtgtaaaatttgtaggtgacagtgatcttgttttg
actgcttcggctgacaagacagtccgtgtgtggcgggactctggggatgggcagtatgct
tgtgggcatacgctgaatgatcattctgaagaggtgcgtgctgtaactgtgcatgccaca
aataaatactttgtgtcggcgtctcttgacagtacatggtgcttctacgatctttcttct
ggcttatgccttgcaaaggtagcagatgattctgagaaagtggattacacggctgctgct
tttcatcccgatggtctcattctcggaaccggtacttctcaatctgttgtcaagatttgg
gatgttaaaagtcaggcaaatgtggcaaggtttgatggacacacgggtgaagttacctct
atatctttctccgagaatggttacttcctcgcgactgctgccgaggatggtgttaaattg
tgggacctgcgcaagttaaggaacttcaggtcattctcatctgcagatgcaaactctgtg
gagtttgatcctagcggttcttatcttggtattgctgcatcagatatcagactataccag
acggcgagtgtgaaagctgaatggaaccttatcaagacacttccagacctttctggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgcagttggctcaatg
gaccgtaacctacggatatttggtctccctggtgacgaaaaagccaacgcggatgatgac
tctgcacaagactcgtga
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integrated database retrieval system
