Bordetella sp. J329: CBF45_00340
Help
Entry
CBF45_00340 CDS
T05850
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
boj
Bordetella sp. J329
Pathway
boj02020
Two-component system
boj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CBF45_00340
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CBF45_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boj03021
]
CBF45_00340
Transcription machinery [BR:
boj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CBF45_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_3
HTH_23
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AZV95306
LinkDB
All DBs
Position
88962..90347
Genome browser
AA seq
461 aa
AA seq
DB search
MIRPALEIRQSQQLVLTPQLQQALRLLQLSSLDLQQEISQALTENPVLELESPEPAAESV
AAEDLFSGGGGPRQDGDDDFFPEAAATPSLREHLLGQISCTRASRRDLALMTVLIDELDD
NGYLAASFEEILAYLPESLEVEQGELEAALALLQNMEPAGIAARTMSECLLLQLRQPDAK
VWPEARDAAIVALARRLCERHLDALAAGRLAFLCEELKCSPAEVRTAHALIRRLDPYPGR
AWTVPVADFAVPDVIAYRSGNGWRVRLNGDLVPRLSVNDAYVQALGQEPRGSYEGLQSHV
QQARWLIRQVAQRFDTLLRVSTEIVARQQAFFESGMVALRPMVLREIAEALGMHESTISR
ATSSKYMATPHGTLELKRFFSTGVPAADGESASAASIQAMMREMLDQEDPRKPLSDSQLM
AKLAERGVELARRTVAKYREGMRVPTASQRKAMALMRMDDC
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgatacgacccgcgctggaaattcgccaaagtcagcagttggtgctgacgccacagttg
caacaggccttgcgtctcttgcaactgtcgtcgctggacctgcaacaggaaatctcgcag
gcgctgacggaaaacccggttctggagctggaatcccccgaacccgccgctgagtcggtg
gcggccgaggatctgttttccggaggcggcggcccgcgtcaggacggcgacgacgatttt
ttccccgaggctgccgccacgccgtcgctgcgcgagcacctgctggggcagatttcctgt
acccgtgccagccgtcgtgacctcgcgctgatgaccgtgctgatcgacgaattggacgat
aacggctatcttgcggccagtttcgaggaaatcctggcctatttgccggaatcgctcgag
gttgaacagggcgaactggaagcggcactggccttgctgcagaatatggagccggccggt
attgccgcccgcacgatgtccgaatgcctgctgctgcaattgcggcagccggatgccaag
gtctggcccgaggcccgcgacgctgccattgtggcgctggcgcggcgcctgtgcgagagg
catctggacgccctggcggcgggccggcttgctttcctgtgcgaggaattgaagtgttcg
ccggccgaggtgcgtaccgcgcacgccctgatccggcggttggacccttacccgggccgg
gcctggacggtgccggtggcggattttgcggttccggacgtgatcgcttaccgtagcggc
aatggctggcgtgttcgcctgaatggcgacctggtgccgcgcctgagcgtgaatgatgcc
tatgtgcaggctctggggcaggagccgcgcggcagttacgaaggcctgcagtcccatgtg
cagcaggcgcgctggctgatccgacaggtagcgcagcgcttcgatacgctgctgcgcgtc
tctaccgagatcgtggcgcggcagcaggctttcttcgaatccggcatggtggcgctgcgg
ccgatggtgctgcgcgagattgccgaggccttgggcatgcacgagtccacgatatcgcgg
gcgacctccagcaagtacatggcgacgccgcatggcacgctggagctcaagcggtttttc
agtaccggcgtgccggcagccgatggcgagtcggcttctgcggcgtcgattcaggcgatg
atgcgtgaaatgctggatcaggaagatccgcgcaagccgctgtccgatagccagctgatg
gccaagctggccgagcgcggtgtcgagctggcgcgccgcacggttgccaagtaccgggaa
ggcatgagagtgcctacggcttcgcagcgcaaggccatggccttgatgcgtatggatgat
tgttga
DBGET
integrated database retrieval system
