Bordetella sp. J329: CBF45_17245
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Entry
CBF45_17245 CDS
T05850
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
boj
Bordetella sp. J329
Pathway
boj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBF45_17245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boj03021
]
CBF45_17245
03400 DNA repair and recombination proteins [BR:
boj03400
]
CBF45_17245
Enzymes [BR:
boj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBF45_17245
Transcription machinery [BR:
boj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBF45_17245
DNA repair and recombination proteins [BR:
boj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBF45_17245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AZV95257
LinkDB
All DBs
Position
complement(3866464..3870579)
Genome browser
AA seq
1371 aa
AA seq
DB search
MPYSFTEKKRIRKNFAKREDVQNVPYLLATQLQSFRTFLQSEVSSSERKDEGLQAAFSSI
FPIVSHNQMARLEFVSYTLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTDTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLFFRVDRRRKMPVSILLKAIGMTPESILAYFFDFDHFDLKSEG
GMMEFVPERWKGEVARFDITDREGTVLVEKDKRINAKHLRDIAKAGIEWISVPEDFLVGR
VLAKNIVDPDTGEVLANANDEITESLLENLRSAGVPSIQTLYTNDLDRGPYISMTLRTDD
TADQNAARVAIYRMMRPGEPPTEEAVEALFNRLFYSEESYDLSRVGRMKVNSRLNRENVL
EGPTTLTNEDIVETIKLLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKV
ENGRVTDTIDYLSAIEENRYVIAQANARLDEENRFVDDLVACREDGETMMTSGANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQARRGGIVDYVDAERVVIRVNDEENIAGEVGVDIYNLIKYTRSNQNTNINQRPIVRRG
DLVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISENVVANDRYTSVHIE
ELTVVARDTKLGAEEITRDISNLPEVQLNRLDDSGIVHIGAEVRADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDTFDRIEKLLVGKTVNGGPRKLAKGSVLSKEYLADLTDRWQWFDI
RLADEQHALVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRL
QPGDKMAGRHGNKGVVSRILPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWA
AKGLGHRVAEMLADERKIEVAKLRAFFEKVYNGSGTPAALDTLTDDEIITMAYNLKNGVP
LATPVFDGASEEDIEQMLRLAYPDEIAQKLRLTDSRTQAWLIDGRTGEPFERPVTVGYMH
YLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEML
TVKSDDINGRTKIYENIVKGDHTIDAGMPESFNVLVKEIRSLAIDMDLERN
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtttaccgaaaaaaagcgcatccgcaaaaattttgccaagcgggaagac
gttcagaacgtgccgtatctgctggcaacgcagctgcagtccttccggacttttctgcag
tcggaagtgtcctcatccgaacgcaaggatgaaggcctccaagccgctttttcttctatt
ttcccgatcgtcagccacaatcagatggctcgtctggaattcgtcagctacacgctcggc
gaaccggtcttcgacgtcaaggaatgccagcaacgtggtctgacctatgcgtcgccgctg
cgcgccaaagtccgcctggtgctgctcgaccgtgaagtgagcaaaccgacagtcaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgaccgacaccggttcgttc
gtcatcaacggtaccgagcgcgtcatcgtgtcgcagctgcaccgttcgcctggcgtgttc
tttgagcacgaccgtggcaagactcacagttccggcaagctgctgttctctgcccgcgtg
attccttaccgtggctcctggctggacttcgagttcgaccccaaggatctgctgttcttc
cgcgttgaccgtcgccgcaagatgccggtgtcgatcctgctgaaggcgatcggcatgacg
ccggaatccatcctggcctacttcttcgatttcgaccacttcgacctgaagagcgaaggc
ggcatgatggaattcgtgccggaacgctggaagggtgaagtggcccgtttcgacatcacc
gaccgcgaaggcacggtgctggtcgagaaggacaagcgcatcaatgccaagcatctgcgc
gatatcgccaaggcgggtatcgagtggatttccgtgcccgaggacttcctcgtgggccgt
gtgctggccaagaacatcgttgatccggataccggcgaagtgctggccaacgccaacgac
gaaatcaccgagagcctgctggaaaacctgcgcagcgccggcgtgccgtccatccagacg
ctgtacaccaacgacctggatcgcggcccctacatctcgatgacgctgcgtaccgacgac
actgcggaccagaacgccgcccgcgtcgcgatctaccgcatgatgcgtcctggcgagccg
cctacggaagaagccgtcgaggccctgttcaaccgtctgttctacagcgaagagtcctat
gacctgtcgcgcgtgggccggatgaaggtcaacagccgcttgaaccgcgaaaacgtgctg
gaaggcccgaccacgctgaccaacgaagatatcgttgaaaccatcaagctgctggtcgag
ctgcgtaacggccgtggccagatcgacgatatcgaccacttgggcaatcgtcgcgtgcgc
tgtgtgggtgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatttccgcggcgatcaaggagttcttcggttccagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttccgctctgggc
ccgggcggtctgacgcgtgagcgcgccggcttcgaagtgcgcgacgtgcacccgacccac
tacggccgcgtgtgtcccatcgaaacgcctgaaggtcctaacatcggcctgatcaactcg
atggcgctgtacgcccgcctgaacgaatacggcttcctggaaacgccgtatcgcaaggtc
gagaacggccgcgtgaccgacacgatcgactatctgtcggccatcgaggaaaaccgttac
gtcatcgctcaggccaacgcgcgcttggacgaggaaaaccgtttcgtcgacgatctggtt
gcctgccgcgaagatggtgaaaccatgatgacgtccggtgccaacgtgcactacatggac
gttgccccgtcgcagatcgtgtccgtggcagcctcgctgattccgttcctggagcacgat
gacgccaaccgtgcactgatgggcgccaacatgcaacgccaggccgtgccttgcctgcgt
ccggaaaaaccgctggtcggtaccggcatcgagcgcaccgtcgccgttgactcgggtacg
accgtgcaggcccgccgtggcggtatcgtcgattacgtcgatgccgaacgcgtggtgatt
cgcgtcaatgacgaagaaaacatcgctggcgaagtcggcgttgatatctacaacctgatc
aagtacacgcgttccaaccagaacaccaacatcaaccagcgccccattgtgcgccgtggt
gacctggtggctcgtggcgacgtgctggctgatggcgcttcgaccgatctgggcgaactg
gcgctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaggat
tcgatcctgatctccgagaacgttgttgccaatgatcgctatacctcggtgcacatcgag
gaactgacggtcgtggcgcgcgataccaagctgggtgcggaagaaatcacccgcgatatc
agcaacctgcctgaagtgcagttgaaccgcctggatgattccggcatcgtgcacatcggc
gcggaagtccgtgccgatgacgtgctggtcggcaaggtgacgcccaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgattttcggcgagaaggcttccgacgtgaag
gacacctcgctgcgcgtgccctcgggcatggtcggcaccgtcattgacgtgcaggtgttc
acgcgtgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgacgaactgcgc
cgctatcgccaggacctgaacgaccagctgcgtatcgtcgaaaacgataccttcgaccgt
atcgagaagctgctggtcggcaagaccgtcaacggcggtccgcgcaagctggccaagggt
tccgtgctgagcaaggaatacctggctgacctgaccgatcgctggcagtggttcgacatc
cgcctggccgacgaacaacatgcgctggtgctggagcaggccaaggaatcgctggagcag
aaacgccaccagttcgacctggccttcgaagaaaagcgcaagaagctgacgcaaggcgac
gagctgcctccgggcgtgctgaagatggtcaaggtctacctggccgtcaagcgccgcctg
cagcctggcgacaagatggcaggccgtcacggtaacaagggtgtggtgtcccgcatcctg
ccggtggaagacatgccccacatggctgacggtacgccggccgacatcgtgctgaacccg
ctgggcgtgccttcgcggatgaacgtgggtcaggtgctggaagttcacctgggctgggct
gccaagggcctgggccatcgcgtggccgagatgctggccgacgagcgcaagatcgaagtg
gccaagctgcgcgccttcttcgagaaggtgtacaacggttccggtacgccggccgcgctg
gacaccctgacggatgatgagatcatcacgatggcgtacaacctgaagaacggcgtgcct
ctggcaacgccagtgttcgacggcgccagtgaggaagacatcgaacagatgctgcgtctg
gcctatccggacgagatcgcgcagaagctgcgcctgaccgacagccgcacgcaagcgtgg
ctgatcgacggccgcaccggcgaaccgttcgagcgtcccgtcaccgttggctacatgcac
tatctgaagctgcaccacttggtcgatgacaagatgcacgcgcgttcgaccggcccgtac
tcgctggtgacccagcagccgctgggcggtaaggcacagttcggtggccagcgtttcggg
gagatggaagtgtgggcgctggaagcctacggcgcctcttataccctgcaggaaatgctg
acggtgaagtccgacgatatcaacggccgtaccaagatctacgagaatatcgtcaagggc
gatcacaccatcgacgccggcatgcccgagtcgttcaacgtgctggtcaaggaaattcgt
tccctggccatcgacatggatttggagcgtaactaa
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