Burkholderia oklahomensis E0147: DM82_2922
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Entry
DM82_2922 CDS
T03284
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bok
Burkholderia oklahomensis E0147
Pathway
bok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM82_2922 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bok03021
]
DM82_2922 (rpoC)
03400 DNA repair and recombination proteins [BR:
bok03400
]
DM82_2922 (rpoC)
Enzymes [BR:
bok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM82_2922 (rpoC)
Transcription machinery [BR:
bok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM82_2922 (rpoC)
DNA repair and recombination proteins [BR:
bok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM82_2922 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
DUF6744
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AIO65777
LinkDB
All DBs
Position
1:complement(3309875..3314113)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINAKGEGLSFTGVSEVLRAYENK
EVELASRVNVRITEMVRNEDTSEGAPQFVPKISLYATTVGRAILSEILPAGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTALTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDIGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAENKRPATYDNILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEL
SDRERFDQIAAEEAFEFGTPAAPAEEPQHPAE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaagtttttgacgcgatc
aagattggtctggcttcgccggacaagatccgttcgtggtcgttcggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagccggagcgcgacggtctgttctgcgcgaag
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgtgaa
cggatgggccacatcgagctggcgtcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgatcgatccgggcatgacgccgctgaaggcgcgtcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgcgcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgatcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggccgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgtttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagttgcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctcgaagtgatgggcgtcgcgacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacgcccgtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgcgcgccgacgctgcaccgtctcggcatccaggcgttcgagccggtt
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgtttaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgcttgcgtcgaacaacgtgctgtttccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaatgcg
aagggcgaaggcctgtcgttcaccggcgtgtcggaagtgctccgcgcgtacgagaacaag
gaagtcgagctcgcatcgcgcgtgaacgtgcggatcaccgaaatggttcgcaacgaggac
acgtcggaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggaaatcctgccggccggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctcatcaacacggcgttccgcaagtgcggtctgcgc
gcgacggtggtcttcgccgatcagttgatgcagtcgggcttccgcctcgcgacgcgcgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagttgtcgacggagccggtgacggaccgcgacggcaacgaaacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagacggcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgtcgtcgtcgaggacgattgcggc
acgtccaacggcgtcgcgatgaaggcgctcgtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgcatcctcggccgcgtcgcggtggcggacgtcgtgaatccggaaacgcaggaa
accctgtacgaatccggcacgctgctcgacgaaacggcggtcgaagagatcgagcgcctc
ggcatcgacgaagtgcgcgtgcgcacggcgctgacctgcgaaacgcgctacggcctgtgc
gcgtcgtgctacggccgcgacctcggccgcggctcgctcgtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcttcgtcggtcgaagcgaagagcaac
ggtaccgtgcgcttcacggcgacgatgcgttacgtcacgaacgcgaagggcgagcagatc
gtcatctcgcgctcgggcgaggcgatgatcacggacgatatcggccgtgagcgcgagcgc
cacaaggtgccgtacggcgcgacgctgctgcagctcgacggtgcgcagatcaaggcgggt
acgcagctggccacgtgggatccgctgacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacc
ggtctttcgaccctcgtcgtgatcgacgtgaagcgccgcggttcgcaagcgtcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgaagaggtgaagatcccgggcacg
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caagtgcaggtgggggaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcacgggtacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaatcagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgatgctcaggtcgtcaacaagggcgaaatgatcgtggacggtccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcactgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgcttcgccgcgtgcagatcgtcgacaacggcgatacgcgtttc
atccctggcgagcaggtcgagcgttcggacatgctggacgagaacgatcgcatgatcgcc
gagaacaagcgtccggcaacgtacgacaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggcaggtacgggcctcgcgttccacaaggcgcgcaaggcgaaggaactg
tcggatcgcgaacgtttcgaccagatcgcagcggaagaggcgttcgagttcggcacgccg
gcggcacctgccgaagagccgcagcatccggcggagtaa
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